BAC Information

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BAC

Clone NameMSMg01-320P09
Chromosome3 (Build37)
Map Location 52,210,474 - 52,210,702
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
Downstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320P09.T7 (MSMg01no320_p09.b1)MSMg01-320P09.TJ (MSMg01no320_p09.g1)
ACCAG440059AG440060
length735735
length of high quality
(start - end)
650 (75 - 724)289 (112 - 400)
definitionCHROMAT_FILE: MSMg01no320_p09.b1 PHD_FILE: MSMg01no320_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:36 2005CHROMAT_FILE: MSMg01no320_p09.g1 PHD_FILE: MSMg01no320_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAGATATCACAACATTTCACAATAGCCACAAATAATATAAAAT
ATCTTGGGGTAACTCTAACCAACCAGGTGAGGGTACAAAAACTTCAAGTC
ATTGAAGAAAAAAATTGAAGGAGTTAGAAGATGGAGAGATCTCCCATGCT
CATGAATTGGTAGAATCAACGTAGTGAAAATGCCACTTAATATTGATCTT
AATATGATCTTACCAACATCAATCTACAGATTCAATGAAATTCTCATCAA
AATTTCAACACATTTTTTTACAGACCTTGAAAAGAACAATACTCAACTTC
ATATGGAAAAACAAAGCAAAACAAAAAAAAAAATCAGGATAGCTACAACA
ATCCTGTATAATAAAATAACTTCTGGATCTATTGCCATTACTGTTTCAAG
CTATACTACAGAGCAATAGTAATAAAAACCTCACGCTATTGGCATCAAAA
CAAATAAGCTAATTGTGGAGTCAATTGAGAACCCACAAGTCAATCCACAC
AGCTATGGACACTTGATTTCTGACAAAGAAGACAAAATTATACAATGAGA
AAAGAGAAAGCATCTTCAACAATTGGTGCTGGTCTAATAGATATCTGCAA
GTAGAAGAATGTATAAATAGATCCATATCTATCACTCTGCACAAAACTCA
AGTCCAAGTGGATCAAAGATCCCAACATTAAACGN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGACACAA
AAAATTCCACTATTAGAGAGATATTTCTGGGAGTTTAAGCACTATCTTCG
ATCATGAGAGATTTTTTTTTTAGATATATATTTTAGGACAGTACATAGTT
GTATTAAGCGGTTTTCTTAAAACCAATTTTGAGTTTATTTCTTTTAGTAA
GTGATCTTGCATATGTGTATAACTATAATCTATTCCTCATATTGTTATTC
TCTTAAAAGTTTTTGTTCACTTCCAATGCTTGACTCACACTCTAGGTTAC
TATATAATTTGAATTTTCATTATAGTCGTTGTGATTTTCTTTTTTTTTTC
CCCCCCCCCCCCCTTGGTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGT
CTTGAAAAAAAAAAACTCACTTTGGAGACCAGGCTGGCCTCGAACTCATA
GATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGCCAC
CACCGCCCGGCGATTTTCTAAATTTTGATGAACCTTAATTTCCTATTTCA
AAAATTAACTCTACCCCTTTTTTTCTTTTTTTTTTTCGGTGCCTTCCCAA
AAGGACTTTCTCTCCCGCTTTTCTTCTTTTCACCGGCTACCCTCCTTAAT
CAAAACAACGGCGGTTTTACACCCTTTTTTTATCTTGGTTTATCTCTTGT
TCCTCCTCGTTCCATTAAATTTTTCTACACGTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_p09.g1 MSMg01no320_p09.g1 CHROMAT_FILE:
MSMg01no320_p09.g1 PHD_FILE: MSMg01no320_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:36 2005
         (289 letters)



>mm_chr3_52210274_52210962
          Length = 689

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttttttttagatatatattttaggacagtacatagttgtattaagcggttttcttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttttttttttagatatatattttaggacagtacatagttgtattaagcggttttcttaaa 370

                                                                       
Query: 61  accaattttgagtttatttcttttagtaagtgatcttgcatatgtgtataactataatct 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 369 accaattttgagtttatttcttttagtaagtgatcttacatatgtgtataactataatct 310

                                                                       
Query: 121 attcctcatattgttattctcttaaaagtttttgttcacttccaatgcttgactcacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 attcctcatattgttattctcttaaaagtttttgttcacttccaatgcttgactcacact 250

                                                            
Query: 181 ctaggttactatataatttgaattttcattatagtcgttgtgattttct 229
           ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 249 ctaggttactatataatttgaattttcattatagtagttgtgattttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)