Query= MSMg01no321_e18.b1 MSMg01no321_e18.b1 CHROMAT_FILE:
MSMg01no321_e18.b1 PHD_FILE: MSMg01no321_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:00 2005
(272 letters)
>mm_chr3_118351532_118352203
Length = 672
Score = 503 bits (260), Expect = e-147
Identities = 266/268 (99%)
Strand = Plus / Plus
Query: 5 gaattcaagatcctccatttggtactcagaaaacttaacaaagccaattacaaaaccata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagatcctccatttggtactcagaaaacttaacaaagccaattacaaaaccata 264
Query: 65 tgcctataagctcagaactcaaaagagaaaggactgtagatgtgtggtctttctgatcca 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 tgcctataagctcagaactcaaaagagaaaggactgtagatgtgtggtctttctgatcta 324
Query: 125 tacatggagaccttgtctcaaaagaaatgtggagcacgtagggggaaaggaagaaagaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacatggagaccttgtctcaaaagaaatgtggagcacgtagggggaaaggaagaaagaga 384
Query: 185 aagagaaggaggaggagaaaagatataggaaaggaaaaacgaaagaggcaggggagggaa 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 aagagaaggaggaggagaaaagatataggaaaggaaaaacaaaagaggcaggggagggaa 444
Query: 245 tgaaggaggtagggaggaaggggctgcc 272
||||||||||||||||||||||||||||
Sbjct: 445 tgaaggaggtagggaggaaggggctgcc 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no321_e18.g1 MSMg01no321_e18.g1 CHROMAT_FILE:
MSMg01no321_e18.g1 PHD_FILE: MSMg01no321_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:00 2005
(339 letters)
>mm_chr3_118538969_118539707
Length = 739
Score = 629 bits (325), Expect = 0.0
Identities = 338/347 (97%), Gaps = 8/347 (2%)
Strand = Plus / Minus
Query: 1 aagtttctttgtttttaataagtgtacaaaatagcgacttggaatcctcttataacaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagtttctttgtttttaataagtgtacaaaatagcgacttggaatcctcttataacaaag 621
Query: 61 gggtcaaaaaacaaaaagaaaaagaaaaacattccatttgaggaagaagtgataaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggtcaaaaaacaaaaagaaaaagaaaaacattccatttgaggaagaagtgataaaatat 561
Query: 121 tctctttacttta--------atcaggaaccttgtgttcctggcacacatcactcatagt 172
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctctttactttaatcagtttatcaggaaccttgtgttcctggcacacatcactcatagt 501
Query: 173 tacaaagacccaccccaagagaagtgtcctatacatactcctcgttactatgccctggtc 232
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 500 tacaaagacccaccccaagagaagtgtcctatacatacccctcgttactatgccctggtc 441
Query: 233 ttaattttgttttacatatgcaatgtctatgaaattaggaagaacaaatcgctgcatgtg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaattttgttttacatatgcaatgtctatgaaattaggaagaacaaatcgctgcatgtg 381
Query: 293 cttgaatgtgcagtgtgttaggctacattaatatttgacacctgtgc 339
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttgaatgtgcagtgtgttaggctacattaatatttgacacctgtgc 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
