BAC Information

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BAC

Clone NameMSMg01-321M06
Chromosome3 (Build37)
Map Location 152,719,470 - 152,719,810
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
Downstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321M06.T7 (MSMg01no321_m06.b1)MSMg01-321M06.TJ (MSMg01no321_m06.g1)
ACCAG440648AG440649
length678731
length of high quality
(start - end)
66 (231 - 296)345 (71 - 415)
definitionCHROMAT_FILE: MSMg01no321_m06.b1 PHD_FILE: MSMg01no321_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:35 2005CHROMAT_FILE: MSMg01no321_m06.g1 PHD_FILE: MSMg01no321_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAAATTTGCGGCGCTAAACGACTCCTATTCCCACGCGCGCGGAANCCAG
CCTTTTCTGCACCACCGGNCANCACCCCAGGGACATGCNCCAAGCAAAGN
AAAGCATGCCCAAACCNANAACAANAGNANAAGNCCNNACGNNAAGGGAA
GGGAGGGAAAACAGGNCCCNTNGCNCNNNCNNCCACAGAACCGGAACAAA
ACGGAACCGCACACGCAAAACCCCCNAACCACAAAATTTTTGTGAAGTTC
ACATGTTCACATGCTCAGAACACTCAGAAGGCATCAGATGGCAGACGCTT
TGTTTTTTTTTTCAAGGCACACCAACGNNNGCCACGGAAAGCTTTTTTTT
TTCCCCGGCCACCCCCCGNANANTAAANANANAGANGANNGAGAGCCCCC
CCCAAATTATCAAAATGTGATCCCGCGGGTCCATACAGTGCCACAGAGGA
TCCCTTACAGCAAAACCCCCCCAAATTGAATAAATGCACTTGTCTAAACC
GGGTTTATCTTGCCTTTGCATTTACACCTGCCCCTGATATGCAACTATTT
GTTTTTTGAACCTCCCCCCGGTTACCTTTTTTTGCCCCTCATTTCTCCGA
TAATTCTTGCCTCTCTTTCCTATTTTACATCCCTTCCCTATTTTTTTTTT
TTTTTATACCCCAATCCCCCTTGTTTTT
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCTGCAAAATTCTTTAGGGTCTAAATTAATAAGCAGAC
TGGGTTCTGAGACCCACTGTGACAGACAGCCAACTAAGCAAGGGCTATGA
GGACTGAGTGATATGGCCTCCTGGTGACCAAAACCTCAAGTCTTTTATTT
TCAATGAAGACAGGACAAATGTTCCAGAATAGGAAGCCATTTTGTTTGTT
TGGTTTTTGCTTAGTCAGGTTTTTTTCGTTTGTTTTGTTTTTAGACTGGG
GTCTTTAGTTTAACAGGCCTTTTTGTTCTGGAACTTTCTCAATAGACCAG
GCTGACCTCAAATTTACAGGCATCCACCTGCCTCTGCCTCCCAAGTGCTG
GGATTAAAGGTGCCCCCCCCCACCACTCACCTGACACAGGGCAATTTCTA
AGTGTTGACAGGTGGACAGAATACCCTGCTTCCGCGATTTATTTTTAATA
TTTTTCTACTGGGGGTTTGAATGAAATGATAGCATTAAAAAGTAGAGAGA
CTGAAGTTTAAAGTCAGGCAATAATCATGAATAATCTCTATTTGGTTTTG
ATCAGGCAGATTTACTGCCATTATTTTATGTGACTTTAGTGTAGCTGTCA
CATACCTGTACCTAGGATTCTGCGCTTTCTTCAGGTGTAAATGCTGTCAT
TTTGTCGTACTGCATTCTGCATAAATACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_m06.g1 MSMg01no321_m06.g1 CHROMAT_FILE:
MSMg01no321_m06.g1 PHD_FILE: MSMg01no321_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:35 2005
         (345 letters)



>mm_chr3_152719400_152720143
          Length = 744

 Score =  592 bits (306), Expect = e-173
 Identities = 333/342 (97%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttagggtctaaattaataagcagactgggttctgagacccactgtgacagacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 attctttagggtctaaattaataagcagactgggttctgagacccactgtgacagacagc 352

                                                                       
Query: 61  caactaagcaagggctatgaggactgagtgatatggcctcctggtgaccaaaacctcaag 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 351 caactaagcaagggctatgaggactgagtgatatggcctcccggtgaccaaaacctcaag 292

                                                                       
Query: 121 tcttttattttcaatgaagacaggacaaatgttccagaataggaagccattttgtttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tcttttattttcaatgaagacaggacaaatgttccagaataggaagccattttgtttgtt 232

                                                                       
Query: 181 tggtttttgcttagtcaggtttttttcgtttgttttgtttttagactggggtctttagtt 240
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 231 tggtttttgcttagtcagtttttttt-gtttgttttgtttttagactggggtctttagtt 173

                                                                       
Query: 241 taacaggcctttttgttctggaactttctcaatagaccaggctgacctcaaatttacagg 300
           |||||||||||  |||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 172 taacaggccttgctgttctggaactttctcaataggccaggctgacctcaaacttacagg 113

                                                     
Query: 301 catccacctgcctctgcctcccaagtgctgggattaaaggtg 342
            |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 112 gatccacctgcctctgcctcccatgtgctgggattaaaggtg 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 744
Length adjustment: 9
Effective length of query: 336
Effective length of database: 735
Effective search space:   246960
Effective search space used:   246960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)