Query= MSMg01no322_e12.b1 MSMg01no322_e12.b1 CHROMAT_FILE:
MSMg01no322_e12.b1 PHD_FILE: MSMg01no322_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:12 2005
(557 letters)
>mm_chr3_85999638_86000594
Length = 957
Score = 789 bits (408), Expect = 0.0
Identities = 450/464 (96%), Gaps = 2/464 (0%)
Strand = Plus / Minus
Query: 95 tgtttccttagttatcaaagtacactgtttcctttggtgcatagcagggttgttctagga 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tgtttccttagttatcaaagtacactgtttcctttggtgcatagcagggttgttctagga 898
Query: 155 gcccctgcagacagcgggatgctcacatcctttatttaaaatggctagtgttacagagcc 214
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gcccctgcagacagcaggatgctcacatcctttatttaaaatggctagtgttacagagcc 838
Query: 215 tgcataatttatttaatctctagattactttagctaaactgctagtgcccagtgtaacgt 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tgcataatttatttaatctctagattactttagctaaactgctagtgcccagtgtaacgt 778
Query: 275 aaatgctgtatcaagagctgaatgttcaacacagatgctatgttttaaatgcttcccact 334
|||||||||| ||||||||||||||||||||||||||| |||||||||||| || | |||
Sbjct: 777 aaatgctgtaccaagagctgaatgttcaacacagatgcaatgttttaaatgttttctact 718
Query: 335 tgaggttagttaaacgtggggtgtggacatggt-ggcccccacgtcaagaccacgcgtca 393
||||||||||||||||||||||||||||||||| || | || |||| ||||||| |||
Sbjct: 717 tgaggttagttaaacgtggggtgtggacatggtagg-tctcaggtcaggaccacgtttca 659
Query: 394 caccgatagatgattgtttttaactataagggatctttgtgcgcagtttttacattccca 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 caccgatagatgattgtttttaactataagggatctttgtgcgcagtttttacattccca 599
Query: 454 gtaaagtgctggtaagtgagaaaagcttcctaactgttccttttaagcattccgagtgcc 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gtaaagtgctggtaagtgagaaaagcttcctaactgttccttttaagcattccgagtgcc 539
Query: 514 accgctggtgtagtttgtgatccttgctcttgctgtgcggctga 557
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 accgctggtgtagtttgtgatccttgctcttgctgtgcggctga 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_e12.g1 MSMg01no322_e12.g1 CHROMAT_FILE:
MSMg01no322_e12.g1 PHD_FILE: MSMg01no322_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:13 2005
(284 letters)
>mm_chr3_85833145_85833828
Length = 684
Score = 501 bits (259), Expect = e-146
Identities = 282/297 (94%), Gaps = 13/297 (4%)
Strand = Plus / Plus
Query: 1 tgccggtgcttccgtgttcttctaaaggtagttcgctggatgcaggttaacagacaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgccggtgcttccgtgttcttctaaaggtagttcgctggatgcaggttaacagacaggaa 247
Query: 61 ggagatgagtg--cttccgtttgtggaggcaatgtgtgtacagaaaatacattctctatc 118
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 248 ggagatgagtgtgcttccgtttgtgggggcaatgtgtgtacagaaaatacattctctatc 307
Query: 119 cctaggtcagatattagcaaggct-----------ttaccttttcttgattaaaatacat 167
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 308 cctaggtcagatattagcaaggctcgtacacggctttaccttttcttgattaaaatacat 367
Query: 168 tttttaaaggtcactctagattagagatcaagactgccccactgtggataaacaggtcaa 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 368 tttttaaaggtcactctagattagagatcaagactgccccactgtggataaacatgtcaa 427
Query: 228 cttgaaaatgcaggtcacaagaattcttatcccagtgggaaaggtttacttaccaat 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cttgaaaatgcaggtcacaagaattcttatcccagtgggaaaggtttacttaccaat 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
