BAC Information

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BAC

Clone NameMSMg01-322F11
Chromosome3 (Build37)
Map Location 53,007,201 - 53,007,370
singlet/doubletsinglet
Overlap geneLhfp
Upstream geneLOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, LOC100039808
Downstream geneLOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322F11.T7 (MSMg01no322_f11.b1)MSMg01-322F11.TJ (MSMg01no322_f11.g1)
ACCAG441063AG441064
length758742
length of high quality
(start - end)
172 (44 - 215)235 (74 - 308)
definitionCHROMAT_FILE: MSMg01no322_f11.b1 PHD_FILE: MSMg01no322_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:17 2005CHROMAT_FILE: MSMg01no322_f11.g1 PHD_FILE: MSMg01no322_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATACCCGAGGGGGNGNGGAATTCTAGAGNCTTTCTATGATGTCTCCCCC
AGGCGCTCCAAGCTCCCTGACTCCCAGCACAGAGCTTCAGCCCCCACTCA
ATTTTCTGGCCTCTCTTGCAGTTTCTCCTTTACTCAGTACTCTGCCTTTG
TTTGCTGTTCCAAAACATTTTCTTCCATTTGAATCCTTTCTGTCCCCGTA
GATGCCATATGACACAGATTTTTATCAGCTGATGGGCAAATTGCCTTTGC
TCTGAGAGGCTCACACTGTTAACATGCTGAAATCTTTCCTAAGTTATGCC
CAGATATGTGCATACTGCATACACAAATTTTTTTTTTTCTCCCCCCCGCC
GACTTGTTCTGTCTTCCACTGTCTGGTGAAGCACCACCCGCGATGTACAA
AAATACATAATGTCAGAGGGATGAGTACCCATCCGTTTTCATTGGTCTAA
ACCCTGTCTGTCTCTAAAAATTCAAAAATTGATTCTTTCTTTTATGGCTT
CTGTCCCACCATTTCAGTTCTGCTATTTTTCCTGATGCTTCCCCCATCCG
TTATTATTACACTAAAATGCCCACTTCCATCTTATAGCATTCCCCATTGT
TCCTGTCCCCAGGCTAATGAACCATTGTTTTTTTTTTTTTTAACGCCACG
GTCCCATCTTGCTTACTTTTACCGCTTACCGTTATATTACATTTTTTCAC
CCACCCCCCCTCGGTTCATTCATCCTCACCATTTTTGTTCCTGTATTTAT
AGACCTTG
CGATGAAGTGGGAGGCCTGGCGGCCGCCTGGTCCGTAGTGAGGNGAACTA
TAGAAGTTTCGAAAAATCTTGGGACCGCTGGGTTCTGCAGACTTTGGATA
CCTGGGTTTGCAACACTGGCCGCCCCCTTGTACCCCCTGACCAAGGAAAG
TGGAGAATTTAGATGGACATCAGAACATCAGAAAGCCTTTGAAAATATTA
AGGAGGCCCTGCTGACTGTGCAGCCTTGGCACTGCCAGATCTAACAAGCC
CTTCATCCTCTATGTTGATGAGAGGGCAGGGGTGGCCAGAGGAGTTCTTA
TTCAGGCTTNATGTTGTGGAAAGGCTGGTGCATATTTGTCTAAGAAGTTG
TTTTAGTGGCCCCGCCAGCCCCATGTTTAAAGGCCGTTGCTACAGTACCC
CCACTCGTTCAGGATGCTGACAAATTAACTCTGGGACAGCAAATAACTGT
GGTAGCCCCCCACTCTCTTGAAAGCATTATCCATCAGCCCCCAGACTGAT
GGATGACAAATGCCTGGATGACTCACTACCAGAGGCTGCTGCTGACTGAA
CAGGTCCCGTTTGCTCCTCCTGCTATTCTCAACCCTGCCTGCTAAGTGAT
CTAAGTGACCATCCGTGGCCAGGTGTTCCCAAATTGGTATCCTTACAGAA
GCCTTTTCCTAGTGGAAGTTTTTGTACATACCCTTTCAGGATGGGTGTGA
GTCTTACCCCCCAAACAATAATCTGGCTCACGCCGGCGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_f11.b1 MSMg01no322_f11.b1 CHROMAT_FILE:
MSMg01no322_f11.b1 PHD_FILE: MSMg01no322_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:17 2005
         (172 letters)



>mm_chr3_53006999_53007570
          Length = 572

 Score =  306 bits (158), Expect = 6e-88
 Identities = 167/170 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   cccccaggcgctccaagctccctgactcccagcacagagcttcagcccccactcaatttt 62
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 203 cccccaggcgctccaagctccctgactcccagcacagagcttcagttcccactcaatttt 262

                                                                       
Query: 63  ctggcctctcttgcagtttctcctttactcagtactctgcctttgtttgctgttccaaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 ctggcctctcttgcagtttctcctttactcagtactctgcctttgtttgctgtcccaaaa 322

                                                             
Query: 123 cattttcttccatttgaatcctttctgtccccgtagatgccatatgacac 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cattttcttccatttgaatcctttctgtccccgtagatgccatatgacac 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)