TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTCCTTGCCGAATATGCATTTGAATAAATCAACCCTCTGGAAC
CATTCTTTTTAAAACTACCTCTACATGTAAATTCATATACTGTGTACAGA
TGAAATAGTTTATTGATTTGAATTAAAGAACTGCTCAGAATCAGTATGAA
AATCATGACTAATATGATTATGTGAGTTGAAGGAGGTTGCTAAAACATTT
GAATTGTATAGTTAGATACACAGCTGCCAACAAATAAATAAACCTAATAT
TTTCTTGAAACAGTTACTTATTCTTTAGAATTAATTAAAGTCATTAATGA
AATGAATTGTTTCTTTAAAAATATCAAGACCAGTAAAAATCACAGAAAAT
GTTATTATGTTGCCATATATTTTTGCAACAGGAAAAGTGTAAGTTAATGT
GTGGTTCCCTAATTTGAATTTTCATGTAAGGTAAAATGTTGAAGTGTATG
AGTATTATATTGTAAATCCAGGACAGAAAAAAACATGGCATCTTTGCTTT
TGTCTTTGACATAATAGTCATGTTTACCTTGTCATCTCTCTTAAACTGGT
ACTCAAGATTTTTTCCAATAGAATTCCCTTGAAATTTTGTACCTGACTCA
TTTAGAAGAAATATGGACAACATTATATCTTTTAAAAATAGTACTCCAAA
CAAAAAAAAGAAATTATCATAGTTAN

TGGCGGCCGCCTGGATCGNCACCTGAGGTGAACTANAGAAGTAACGNGAC
CAAGTCAGCCTTCAGGNATAGTTCAGTTGGTAGAATGCTTGTCTACAATG
CCCAAAGCCCTTGGGTTCATTCCCACTAATTAATATCTAGTCATTGTGAC
ATATGCCTTCAATTCCAATATATGAAATGTGTAGGAGACTGGCAAACCTG
AAGTTCATATCCTTAGATGCATACTATAAATATAACAATATGTAAACCAG
ATATAGGGAGGGGGATAGAGAAGGGGAGAGGGAAAGAGGGAGAGATTAGA
TGATTTAANAAACAAACAAAAAAGAGAGAACNAAGGGTTTTTTTTATCCC
CCCCCCCGCCCCCCTCAAAGCAACATAAGAATAACTGTACACACCTGACC
CTTAAAAAATAAATTGACTGCATGGTTTAATTTCTGGTAATCTAGCAAGA
CTTTTTCCAAGCCTTAGGAACTCTTGGCCCATAACCTAAATACTATACTC
TATGCTGCTGCATTCATATTTCTTTCTTCCTGTTTATTCACCTGACTTCT
GTTTTCTGATGCTATGAATAGACCCCAAGGTTCCTCTGACCTTAGTTCCT
GTAGTTCCTGCGCATACAAAACATATTTTTTTTTTTTTTTTTNAACAGCA
CATTAAGAACCCAGGAGTATAATTTGACGTTGAAGTTGTTTAAATGCATT
CCT

Query= MSMg01no322_f23.b1 MSMg01no322_f23.b1 CHROMAT_FILE:
MSMg01no322_f23.b1 PHD_FILE: MSMg01no322_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:19 2005
         (681 letters)



>mm_chr3_45777359_45778439
          Length = 1081

 Score = 1253 bits (648), Expect = 0.0
 Identities = 669/676 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactccttgccgaatatgcatttgaataaatcaaccctctggaaccattctttt 64
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactccatggtgaatatgcatttgaataaatcaaccctctggaaccattctttt 264

                                                                       
Query: 65  taaaactacctctacatgtaaattcatatactgtgtacagatgaaatagtttattgattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaactacctctacatgtaaattcatatactgtgtacagatgaaatagtttattgattt 324

                                                                       
Query: 125 gaattaaagaactgctcagaatcagtatgaaaatcatgactaatatgattatgtgagttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaattaaagaactgctcagaatcagtatgaaaatcatgactaatatgattatgtgagttg 384

                                                                       
Query: 185 aaggaggttgctaaaacatttgaattgtatagttagatacacagctgccaacaaataaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggaggttgctaaaacatttgaattgtatagttagatacacagctgccaacaaataaat 444

                                                                       
Query: 245 aaacctaatattttcttgaaacagttacttattctttagaattaattaaagtcattaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacctaatattttcttgaaacagttacttattctttagaattaattaaagtcattaatg 504

                                                                       
Query: 305 aaatgaattgtttctttaaaaatatcaagaccagtaaaaatcacagaaaatgttattatg 364
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgaattgtttcttaaaaaatatcaagaccagtaaaaatcacagaaaatgttattatg 564

                                                                       
Query: 365 ttgccatatatttttgcaacaggaaaagtgtaagttaatgtgtggttccctaatttgaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgccatatatttttgcaacaggaaaagtgtaagttaatgtgtggttccctaatttgaat 624

                                                                       
Query: 425 tttcatgtaaggtaaaatgttgaagtgtatgagtattatattgtaaatccaggacagaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttcatgtaaggtaaaatgttgaagtgtatgagtattatattgtaaatccaggacagaaa 684

                                                                       
Query: 485 aaaacatggcatctttgcttttgtctttgacataatagtcatgtttaccttgtcatctct 544
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 685 aaaacatggcatctttgcttttgtctttgacgtaattgtcatgtttaccttgtcatctct 744

                                                                       
Query: 545 cttaaactggtactcaagattttttccaatagaattcccttgaaattttgtacctgactc 604
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 cttaaactggtactcaagattttttccaagagaattcccttgaaattttgtacctgactc 804

                                                                       
Query: 605 atttagaagaaatatggacaacattatatcttttaaaaatagtactccaaacaaaaaaaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atttagaagaaatatggacaacattatatcttttaaaaatagtactccaaacaaaaaaaa 864

                           
Query: 665 gaaattatcatagtta 680
           ||||||||||||||||
Sbjct: 865 gaaattatcatagtta 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)