BAC Information

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BAC

Clone NameMSMg01-322G21
Chromosome3 (Build37)
Map Location 129,597,834 - 129,598,502
singlet/doubletsinglet
Overlap genePla2g12a
Upstream geneEG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi
Downstream geneCasp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322G21.T7 (MSMg01no322_g21.b1)MSMg01-322G21.TJ (MSMg01no322_g21.g1)
ACCAG441128AG441129
length739745
length of high quality
(start - end)
247 (77 - 323)668 (78 - 745)
definitionCHROMAT_FILE: MSMg01no322_g21.b1 PHD_FILE: MSMg01no322_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:23 2005CHROMAT_FILE: MSMg01no322_g21.g1 PHD_FILE: MSMg01no322_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATGAGGCGG
AATTCAATTTTAGGTTTCTACAAACTCTGGTAAAATTCCATTGGGGTTTG
AGCAGGGTCATAGAGTGAGTGGATGTCTCACCTGCCCCCTTTTAAAGAGG
ATTTCGAGCACTCCAGGCTGGCCTCGAACTGTTTAAGTTTGAGGATGGCT
TTGATCTCCAGGTCCTCCTGCCTCTGTCTCTTGAGTGCTGCAATTACAGG
CCGACCCTGGGTTTTATGTGTGCCAGGCAAACATTCTATTGACTGAGCTA
TAGCCACCACCTCTGGAAACAGTTTNGTTANTAAACCCTGTTTTGCTCTG
CCCACTCTTCTACCATCATGACCCTTTCTTCCTCTAGTTCTCAATGACAC
CAGAGAGGCAGTGTTTCTCTCCACGCCTCAGGCTGTCCCTTGCCTGGTCT
CGAAAGAACCAAACCAAAGAGTCTGTATTCTTGAGTCCAACCCGAACAAA
TCAATGAGTCCTCTTGGGGCTTGGGTTGACAAGGCAACAGGAAGCCGTGG
GTTTTACCCTCACAGGTTCCTGTGGTGTCTTAGCCCTGCCACTGTGGTTC
CCACTCCCTTTAGGACGTTGGTGAGTTTGGAGCTGGGTAGCAACAGCACA
GACTCAGAGCTGTGCTATAGCTTTTGTAGAGCTGTCCAGCCGACACCTTA
TACAATTCTGTGTTCCCTCGTTAGCGCCTCCCTTTATAT
NCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCACATCCCAACACTCAGAT
GTCCTGGGGCGTCTCTCCAGAGAAGTATCAACCGTGATTCCAACTGTACA
AGAGATGCACACTTGGAAACCTTGTAGTTGTGAGTAACATATTTATACCT
ATCTTAGTGGGCTTCAGAGAAACAACACGTTATGTATAATAAAAATGGAG
AATTAATAGTTTTTCCAGGTATAAATGTACATCTGAAATTTCAAAATAAA
TAATATTTCTAAGGGAAGATTGGCCTGTATTTCAAAATAAAATAATGCTG
AAAAGTCCTTACAATGAATTTTACATTTGCTTTCATTTTTATTGTTAAGT
ACAACTATGAACACCAAGTCACACGACCTTAAGCTTTTCTTCCCAGTTTG
GGGGAGCCACCACGACAGCGAGTCTCAGAAGGCATGCTCTTGGATGTCCT
GCTCGCTCCCCATCCCAAGCATGCTCTCTGTTTCTGCCTGGCCCCCCACC
GTTTTCACTTTGAGGTTCTAAAAAAAGACACAGTATAGAAAGGTCTCAAA
ATGACCCGTCGACACAAAACTAAGGCAGCATTAGGCTGTTAAAGCATCGG
ATCTTTGGCAAGGATGGTCCTCCATTCTCGCCTGCTCTCCAGCAGTCAGG
GTCTTTATAGATCTGCTTTTTCTTCATAACGACACCAGCATGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_g21.g1 MSMg01no322_g21.g1 CHROMAT_FILE:
MSMg01no322_g21.g1 PHD_FILE: MSMg01no322_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:23 2005
         (668 letters)



>mm_chr3_129597634_129598702
          Length = 1069

 Score = 1232 bits (637), Expect = 0.0
 Identities = 661/669 (98%), Gaps = 1/669 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcacatcccaacactcagatgtcctggggcgtctctccagagaagtatcaaccgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tgtgcacatcccaacactcagatgtcctggggcgtctctccagagaagtatcaaccgtga 810

                                                                       
Query: 61  ttccaactgtacaagagatgcacacttggaaaccttgtagttgtgagtaacatatttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttccaactgtacaagagatgcacacttggaaaccttgtagttgtgagtaacatatttata 750

                                                                       
Query: 121 cctatcttagtgggcttcagagaaacaacacgttatgtataataaaaatggagaattaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cctatcttagtgggcttcagagaaacaacacgttatgtataataaaaatggagaattaat 690

                                                                       
Query: 181 agtttttccaggtataaatgtacatctgaaatttcaaaataaataatatttctaagggaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 689 agtttttccaggtataaatgtacatctgaaatttcaaaataaataatagttctaagggaa 630

                                                                       
Query: 241 gattggcctgtatttcaaaataaaataatgctgaaaagtccttacaatgaattttacatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gattggcctgtatttcaaaataaaataatgctgaaaagtccttacaatgaattttacatt 570

                                                                       
Query: 301 tgctttcatttttattgttaagtacaactatgaacaccaagtcacacgaccttaagcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 569 tgctttcatttttattgttaagtacaactatgaacaccaagtcacacgggcttaagcttt 510

                                                                       
Query: 361 tcttcccagtttgggggagccaccacgacagcgagtctca-gaaggcatgctcttggatg 419
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 509 tcttcccagtttgggggagccaccacgacagcgagtctcaggaaggcatgctcttggatg 450

                                                                       
Query: 420 tcctgctcgctccccatcccaagcatgctctctgtttctgcctggccccccaccgttttc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 449 tcctgctcgctccccatcccaagcatgctctctgtttctgcctggccccccaccattttc 390

                                                                       
Query: 480 actttgaggttctaaaaaaagacacagtatagaaaggtctcaaaatgacccgtcgacaca 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 389 actttgaggttctaaaaaaagacacagtatagaaaggtctcaaaatgacccgtcaacaca 330

                                                                       
Query: 540 aaactaaggcagcattaggctgttaaagcatcggatctttggcaaggatggtcctccatt 599
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaactaaggcaacattaggctgttaaagcatcggatctttggcaaggatggtcctccatt 270

                                                                       
Query: 600 ctcgcctgctctccagcagtcagggtctttatagatctgctttttcttcataacgacacc 659
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 269 ctcgcctgctctccagcagtcagggtctttatagatctgttttttcttcataacgacacc 210

                    
Query: 660 agcatgcag 668
           |||||||||
Sbjct: 209 agcatgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1069
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1059
Effective search space:   696822
Effective search space used:   696822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)