Query= MSMg01no322_i01.b1 MSMg01no322_i01.b1 CHROMAT_FILE:
MSMg01no322_i01.b1 PHD_FILE: MSMg01no322_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:29 2005
(620 letters)
>mm_chr3_60222787_60223806
Length = 1020
Score = 1021 bits (528), Expect = 0.0
Identities = 585/604 (96%), Gaps = 2/604 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtaggtattcgtagagccacgaagtcagccaaagggaaaggcatacacaact 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggaattctgtagg-attggtagagccacgaagtcagccaaagggaaaggcatacacaact 748
Query: 64 ttgggaggagagaagagggatatttagaagaagcaagttttctagcttgtggttaggaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttgggaggagagaagagggatatttagaagaagcaagttttctagcttgtggttaggaat 688
Query: 124 atattgggattaattacagtgcaagctgtgttgtttttcttcctttgaactctcctgagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 atattgggattaattacagtgcaagctgtgttgtttttcttcctttgaactctcctgagc 628
Query: 184 caaacaagaaagggcaggcatgggctggggtggggtgaagcacttagctttagaatcctc 243
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 627 caaacaagaaagggcaggcatgggctggggtggggtaaagcactgagcttcagaatcctc 568
Query: 244 actgcataggtttcctcccaaaagagtcaaagagctttctttccctcattcatacgtgta 303
|| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||
Sbjct: 567 accgcataggtttcctcccagaagactcaaagagctttctctccctcattcatacgtgta 508
Query: 304 agccccactcatcgcaagccattggtatacagcttctcacctgtgaccacaaaggctgaa 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 507 agccccactcatcgcaagccattggtatacagcttctcacctgtgaccacaaaggctgca 448
Query: 364 cagcacatctcttttagacatcactattttttttaattatggagaatgatttaggtcata 423
||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 447 cagcaaatctcttttagacatgactatgttttttaattatggagaatgatttagttcata 388
Query: 424 taagtgaactaaagcaatctc-aaaaaagacaaaaaatccatgttttctgtcattagtgg 482
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taagtgaactaaagcaatctcaaaaaaagacaaaaaatccatgttttctgtcattagtgg 328
Query: 483 acatttttctgtgtagccataaaatcttgcatgtatatattgaacggaaatggagccagc 542
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 327 acatttttctgtgtagccataaaatcttgcaggtatatattgaatggaaatggagccagc 268
Query: 543 ctggagaaatagagggctgacaggagggggtggggagagaaaatggaattggtttattac 602
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctggagaaatagagggctgaaagaagggggtggggagagaaaatggaattggtttattac 208
Query: 603 agcc 606
||||
Sbjct: 207 agcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_i01.g1 MSMg01no322_i01.g1 CHROMAT_FILE:
MSMg01no322_i01.g1 PHD_FILE: MSMg01no322_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:29 2005
(657 letters)
>mm_chr3_60072244_60073300
Length = 1057
Score = 1232 bits (637), Expect = 0.0
Identities = 652/657 (99%)
Strand = Plus / Plus
Query: 1 ctgcattcacccaccaatatactagtttgttagttaagccctgaatcacctaatggttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcattcacccaccaatatactagtttgttagttaagccctgaatcacctaatggttct 260
Query: 61 gtcttttcaaaccttttgacactaccttcctcttttaaaattacccttctggctgtctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttttcaaaccttttgacactaccttcctcttttaaaattacccttctggctgtctct 320
Query: 121 taaaagccatcatttgagcaaaatcttgctagtgtatgcaatggtgtcagcatttggagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaagccatcatttgagcaaaatcttgctagtgtatgcaatggtgtcagcatttggagg 380
Query: 181 ctgattatgggatggatccctggatatggcagtctctagatggtccatccttttgtctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgattatgggatggatccctggatatggcagtctctagatggtccatccttttgtctca 440
Query: 241 gctccaaactttgtctctgtaactccttccatgggtgttttgttcccaattctaagaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctccaaactttgtctctgtaactccttccatgggtgttttgttcccaattctaagaagg 500
Query: 301 ggcaaagtgtccacactttggtcttcattcttcttgagtttcacgcgtttcgaaaactgt 360
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 501 ggcaaagtgtccacactttggtcttcattcttcttgagtttcatgtgtttcgaaaactgt 560
Query: 361 atcttatatcttgggtattctaagtttctgggctaatatccacttatcagtgagtacata 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcttatatcttggatattctaagtttctgggctaatatccacttatcagtgagtacata 620
Query: 421 tcatttgaattcttttgtgattgggactcaggatcatctgagtgtgatttatctcactca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatttgaattcttttgtgattgggactcaggatcatctgagtgtgatttatctcactca 680
Query: 481 gaatgatgctctccaggtccaaccatttgcctgggaatttcataaattcattctttttaa 540
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatgatgttctccaggtccaaccatttgcctgggaatttcataaattcattctttttag 740
Query: 541 tagctgagtactactccattgtgtaaatgttccacattttttgtatccattcctctgttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagctgagtactactccattgtgtaaatgttccacattttttgtatccattcctctgttg 800
Query: 601 aggggcatctgggttctttccagcttctggctattataaataaggctgctatgaaca 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggggcatctgggttctttccagcttctggctattataaataaggctgctatgaaca 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
