Query= MSMg01no322_j01.b1 MSMg01no322_j01.b1 CHROMAT_FILE:
MSMg01no322_j01.b1 PHD_FILE: MSMg01no322_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:33 2005
(517 letters)
>mm_chr3_111353752_111354668
Length = 917
Score = 936 bits (484), Expect = 0.0
Identities = 508/516 (98%), Gaps = 1/516 (0%)
Strand = Plus / Plus
Query: 3 agtggaatgatctagtcaaagaagtcttccataatctctgcttcagtctctgacaggagt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agtggaatgatctagtcaaagaagtcttccataatctctgcttcagtctctgacaggagt 262
Query: 63 cactgacttaccatcctggaaagacataagcctaacaaaacttttacctcatttgttttg 122
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cactgacttaacatcctggaaagacataagcctaacaaaacttttacctcatttgttttg 322
Query: 123 gtcagtttctttttcatcacagccaaagaaacttgaatcaaaataatttaaatgaactgt 182
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtcagcttctttttcatcacagccaaagaaacttgaatcaaaataatttaaatgaactgt 382
Query: 183 acatttgtactatatttaccagatctcctatgttttgatcgaattgttttgagacattcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acatttgtactatatttaccagatctcctatgttttgatcgaattgttttgagacattcc 442
Query: 243 atgttgtattacttaaacttgacaattttgaattcaatgctgggtcagttgtgtacaaat 302
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 443 atgttgtattacttaaacttgacaagtttgaattcaatgctgggtcagttgtgtacaaat 502
Query: 303 tttagtaccttgaatgactatctcagttcctttaccttagtttttaaatgaaaatataaa 362
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttagtgcctcgaatgactatctcagttcctttaccttagtttttaaatgaaaatataaa 562
Query: 363 cacttaccttataccattgttttcaagataagagattggcatttaatggacaagtatttg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cacttaccttataccattgttttcaagataagagattggcatttaatggacaagtatttg 622
Query: 423 gtaagaatccctgtttctgtatttctgccattttttt-actttcttactttattgaacat 481
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 623 gtaagaatccctgtttctgtatttctgccattttttttactttcttactttattgaatat 682
Query: 482 tttctttatttatatttcacatgttatcccatttcc 517
||||||||||||||||||| ||||||||||||||||
Sbjct: 683 tttctttatttatatttcaaatgttatcccatttcc 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_j01.g1 MSMg01no322_j01.g1 CHROMAT_FILE:
MSMg01no322_j01.g1 PHD_FILE: MSMg01no322_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:33 2005
(517 letters)
>mm_chr3_111520241_111521157
Length = 917
Score = 830 bits (429), Expect = 0.0
Identities = 482/511 (94%), Gaps = 22/511 (4%)
Strand = Plus / Minus
Query: 7 gaattcaaatcaaagcctctaggtttgagttataaaataataaaggcaatgtaatgctgc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaattcaaatcaaagcctctaggtttgagttataaaataataaaggcaatgtaatgctgc 551
Query: 67 atgaatcagaatatttcatgaattaaccacatatcatacatatatgtatattaattacac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atgaatcagaatatttcatgaattaaccacatatcatacatatatgtatattaattacac 491
Query: 127 acagagacacagacacacatgcatatatatacttgtagagataatgcttaagtttctaaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acagagacacagacacacatgcatatatatacttgtagagataatgcttaagtttctaaa 431
Query: 187 tttaagcatgttcagcattggtatgattgaaaaagcatgaccatccctcttcagaattta 246
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 430 tttaagcatgttcagcattggtatgattgaaaaagcatgaacatccctcttcagaattta 371
Query: 247 tctcttttctgtctatgtatgtatatactgtctctgtatacatatgtatgtatttatgtt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctcttttctgtctatgtatgtatatactgtctctgtatacatatgtatgtattta---- 315
Query: 307 tgtgtatatatatatatatatatatatatatatattatacaatgtatatatacgcgtata 366
|||||||||||||||| | ||| | ||||||| |||||||| ||||
Sbjct: 314 --tgtatatatatatatacacata---------a-tatacaa--tatatata----tata 273
Query: 367 tatatatataaaatgttcatcatcttcatctatttgtctgtctgtagatatgtgtttgtt 426
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 272 tatatatatataatgttcatcatcttcatctatttgtctatctgtagatatgtgtttgtt 213
Query: 427 tctatctctgtgatacatagaaatttccacattttaattaagagtttataattatcctgg 486
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 tctatctctgtgatacttagaaatttccacattttaattaagagtttataattatcctgg 153
Query: 487 attccagaagcatctcagcattttcaggatt 517
|||| ||||||||||||||||||||||||||
Sbjct: 152 attctagaagcatctcagcattttcaggatt 122
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
