Query= MSMg01no323_g21.b1 MSMg01no323_g21.b1 CHROMAT_FILE:
MSMg01no323_g21.b1 PHD_FILE: MSMg01no323_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:57 2005
(676 letters)
>mm_chr3_78281636_78282713
Length = 1078
Score = 1241 bits (642), Expect = 0.0
Identities = 669/678 (98%), Gaps = 2/678 (0%)
Strand = Plus / Minus
Query: 1 gcaatgatgacttattgtgaacatgtaggggtggggcagaaatgatagagatctgatcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 gcaatgatgacttattgtgaacatgtaggggtggggcagaaatgatagagatctgatcat 819
Query: 61 atcagagggcagagagactgcctgatcgtctggaaatacctgggatcttatttagtttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 atcagagggcagagagactgcctgatcgtctggaaatacctgggatcttatttagtttag 759
Query: 121 gaattagagtcttgggaatgggtcttgggaatcctctcagtgatcaacacacaaaatttc 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 758 gaattagagtcttgggaatgggtcttgggaatcctttcagtgatcaacacacaaaatttc 699
Query: 181 tgtaggtcaggttaaacgcaatctatatatacattgtttttttgttt-ttt-tttttacc 238
||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 698 tgtaggtcaggttaaacgcaatctatatatacattgtttgtttgtttgtttgtttttacc 639
Query: 239 taaaatgaatataaacctccattttataaacgaaggtatagataatgtgtttatgtacaa 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 638 taaaatgaatataaacctccattttataaacgaaggtgtagataatgtgtttatgtacaa 579
Query: 299 tcttaaggtgagagggtgacttgaacagcaatgctcatttcaaggcaggcatcagaattc 358
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 578 tcttaaggtgagagggtaacttgaacagcaatgctcatttcaaggcaggcatcagaaatc 519
Query: 359 tttcagtccaggagtctctcatagtcaaggcttcttttccctttcacgccctgcttctgc 418
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttccagtccaggagtctctcatagtcaaggcttcttttccctttcacgccctgcttctgc 459
Query: 419 catctaccctaataatatatttacacattctccaatatttttgaattcttatgaaattga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 catctaccctaataatatatttacacattctccaatatttttgaattcttatgaaattga 399
Query: 479 aaagtgttagttttggggcatatggagtttagtttacacaaatgttctagtcctctagag 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 398 aaagtgttagttttggggcatatggagtttagtttacacaaatgttctagtcttctagag 339
Query: 539 tctttcttctgtttaggcttatttttgaatttaagatttgtcatgttctgatgtaatcta 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctttcttctgtttaggcttatttttgaatttaagatttgtcatgttctgatgtaatcta 279
Query: 599 atttctggtagggaaatagagcttgatacacagcacactccttgagcacatgttaacacg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atttctggtagggaaatagagcttgatacacagcacactccttgagcacatgttaacacg 219
Query: 659 tgtgccctccctaatgag 676
||||||||||||||||||
Sbjct: 218 tgtgccctccctaatgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1078
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1068
Effective search space: 711288
Effective search space used: 711288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_g21.g1 MSMg01no323_g21.g1 CHROMAT_FILE:
MSMg01no323_g21.g1 PHD_FILE: MSMg01no323_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:57 2005
(738 letters)
>mm_chr3_78107553_78108686
Length = 1134
Score = 1392 bits (720), Expect = 0.0
Identities = 732/738 (99%), Gaps = 4/738 (0%)
Strand = Plus / Plus
Query: 1 tatttatacatctatttatttatttttgtttgtatacaacaaacctttagccaacattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttatacatctatttatttatttttgtttgtatacaacaaacctttagccaacattgt 260
Query: 61 acagaattgtggaaacctgaaagcaattgcctttcatcaggaatgagaagattgacagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagaattgtggaaacctgaaagcaattgcctttcatcaggaatgagaagattgacagtc 320
Query: 121 tcctcttattcattgcagttctaaaaagtcgtggtacatcaaagagaggttgtttaggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctcttattcattgcagttctaaaaagtcgtggtacatcaaagagaggttgtttaggtc 380
Query: 181 agattggtcttaggacattgtgtggagtattttcttgagttttaattaacatacagtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattggtcttaggacattgtgtggagtattttcttgagttttaattaacatacagtggt 440
Query: 241 ccagatcactgtgtgtgacactcaattctggaacatttaagtgtagaggttagccaagta 300
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ccagatcactgtgggtgacactcaattctggaacttttaagtgtagaggttagccaagta 500
Query: 301 caaacaagcaagcaagtgaacatacatacattcatttctgtcttctcttggctctgatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaacaagcaagcaagtgaacatacatacattcatttctgtcttctcttggctctgatag 560
Query: 361 tcatgtgacctgaccagctgtctcaggctcctgcttcttggctaccccacactgatgggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatgtgacctgaccagctgtctcaggctcctgcttcttggctaccccacactgatgggc 620
Query: 421 tataaccttggatttaatgtaaaataaaccccttcttcctaagttggctttgtcagggta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaccttggatttaatgtaaaataaaccccttcttcctaagttggctttgtcagggta 680
Query: 481 ttttatttcaataaaataagtaaaactagggcatctatatagaaatcagttcaacatggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttatttcaataaaataagtaaaactagggcatctatatagaaatcagttcaacatggt 740
Query: 541 ctaaagacgttaatgcatcagctgaaactgggatcactggaggagagcaggaagaaagat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaaagacgttaatgcatcagctgaaactgggatcactggaggagagcaggaagaaagat 800
Query: 601 ctttaaacgacagaggcaggcatgaatgtatgtagagaactgcaagttttcagaaaagta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctttaaacgacagaggcaggcatgaatgtatgtagagaactgcaagttttcagaaaagta 860
Query: 661 tctaatgaattggaagacaagagttcatgaaataacaaagttcttcattcagatcaaagg 720
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 861 tctaatgaattggaagacaagagttcatgaaataacaaagttcttca----gatcaaagg 916
Query: 721 atgtagttatttgagttg 738
||||||||||||||||||
Sbjct: 917 atgtagttatttgagttg 934
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 738
Length of database: 1134
Length adjustment: 10
Effective length of query: 728
Effective length of database: 1124
Effective search space: 818272
Effective search space used: 818272
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
