Query= MSMg01no323_j14.b1 MSMg01no323_j14.b1 CHROMAT_FILE:
MSMg01no323_j14.b1 PHD_FILE: MSMg01no323_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:20 2005
(668 letters)
>mm_chr3_100782066_100783132
Length = 1067
Score = 1112 bits (575), Expect = 0.0
Identities = 647/683 (94%), Gaps = 22/683 (3%)
Strand = Plus / Plus
Query: 3 gcagtgaccgccttcttgtcatgtgacgttacccagggcacccccagc----cttttcta 58
|||||||| ||||||||||||||||| | ||||||||||| |||| ||||||||
Sbjct: 190 gcagtgactgccttcttgtcatgtgaggctacccagggca----cagcaagtcttttcta 245
Query: 59 gcatcactttaaaatttctaataagccagtccatcctcttcgcatattgcacgcatgtcc 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 246 gcatcactttaaaatttctaataagccagtccatcctcttcgcatattgcacgcgtgtcc 305
Query: 119 tttcctccagagaagctgtcccagctgctgcgattctctcccccgtggtccccttagtga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttcctccagagaagctgtcccagctgctgcgattctctcccccgtggtccccttagtga 365
Query: 179 tggttttcaagggagatttgcttcatcccaggcatcttcaatgagagcacagtgggatcg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tggttttcaagggagatttgcttcatcccaggcatcttcaatgagagcacagtgggatcg 425
Query: 239 ttagctcctttttcttttggttctgaccagcttattatgtgactcctccttctcctctct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttagctcctttttcttttggttctgaccagcttattatgtgactcctccttctcctctct 485
Query: 299 ctctttatagcaaatatgtcatgttagtaatttttatcgagtatgcaatcaaccaacacc 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctctttatagcaaatatgtcatgctagtaatttttatcgagtatgcaatcaaccaacacc 545
Query: 359 acagctttcatttttcacacatggactcaaaaaaaaaaaaaaaaa-------------cc 405
||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 546 acagctttcatttttcacacatggactcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacc 605
Query: 406 aacccagtgcgtgtaatttgcttgaacttaaccatggattccgaatttcatcttgttagt 465
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 606 aacccagtgcatgtaatttgcttgaacttaaccatggattccgaatttcatcttgtttgt 665
Query: 466 ttgatccgtctacttatagctggtccagatctctttgaatcttatttctcagggctgcct 525
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ttgatccgtctacttatagccggtccagatctctttgaatcttatttctcagggctgcct 725
Query: 526 tattactactgtctcccccattgaacacttgacaagcctaacctctgtacctttgggggt 585
||||| |||||||||||| ||||||||||||||||||||| |||| || |||| ||||||
Sbjct: 726 tattaatactgtctcccc-attgaacacttgacaagcctaccctccgtcccttcgggggt 784
Query: 586 gctgcctacaaaactgctgagccaggcagagcgctcctccaggtaaacatgatgccacag 645
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 785 gctgcctacaaaactgctgagccaggcagagcactcctccaggtaaacatgatgccacag 844
Query: 646 tcattcagtcaagaatggagtca 668
|||||||||||||||||||||||
Sbjct: 845 tcattcagtcaagaatggagtca 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space: 695506
Effective search space used: 695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_j14.g1 MSMg01no323_j14.g1 CHROMAT_FILE:
MSMg01no323_j14.g1 PHD_FILE: MSMg01no323_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:20 2005
(636 letters)
>mm_chr3_100940539_100941574
Length = 1036
Score = 1011 bits (523), Expect = 0.0
Identities = 526/527 (99%)
Strand = Plus / Minus
Query: 107 ttcttcaatatcttgactttttgttatagaagtctttcttaagttatatatattattgtt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ttcttcaatatcttgactttttgttatagaagtctttcttaagttatatatattattgtt 977
Query: 167 tacttaatttaggaggagttattctgaatggaatatttttttaacttctttctcagagag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tacttaatttaggaggagttattctgaatggaatatttttttaacttctttctcagagag 917
Query: 227 tagactattactataaaaagccactaagttattgtattgttattattattgttgttgttg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tagactattactataaaaagccactaagttattgtattgttattattattgttgttgttg 857
Query: 287 ttattattattgtcattattattgatttttgtatcctgcataatttaccaccatcccttt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ttattattattgtcattattattgatttttgtatcctgcataatttaccaccatcccttt 797
Query: 347 taggatggcaggtaacatgttgttaaacgatttgcatccaaacagaagcaactacagtct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 taggatggcaggtaacatgttgttaaacgatttgcatccaaacagaagcaactacagtct 737
Query: 407 tggcacatggtagcatgagctttggctgtcttggagaagtccttcacctggagtgcttca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tggcacatggtagcatgagctttggctgtcttggagaagtccttcacctggagtgcttca 677
Query: 467 gcagaaaaagggaggtgaaggacaatactgttctcttggtttctcactatcagataaggg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gcagaaaaagggaggtgaaggacaatactgttctcttggtttctcactatcagataaggg 617
Query: 527 agcacagggatgggagaagaccatgttggttgggtggtacccagcttcatgtctggaact 586
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 616 agcacagggatgggagaagaccatgttggctgggtggtacccagcttcatgtctggaact 557
Query: 587 cttacttgtcctgtgaatatttgatgtctgatacctaaaggtttgaa 633
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cttacttgtcctgtgaatatttgatgtctgatacctaaaggtttgaa 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
