BAC Information

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BAC

Clone NameMSMg01-323K08
Chromosome3 (Build37)
Map Location 103,038,900 - 103,039,536
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2
Downstream geneTrim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323K08.T7 (MSMg01no323_k08.b1)MSMg01-323K08.TJ (MSMg01no323_k08.g1)
ACCAG442009AG442010
length1,1421,234
length of high quality
(start - end)
---636 (137 - 772)
definitionCHROMAT_FILE: MSMg01no323_k08.b1 PHD_FILE: MSMg01no323_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:26 2005CHROMAT_FILE: MSMg01no323_k08.g1 PHD_FILE: MSMg01no323_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGTTCTNNNNNNNNGGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGATTGCATTCTGAAGCCCAAACGCCATTXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTGGC
CCAAGAAATAACCAAAGACCCCCATTGTTTAAATTTCTAAAACCGGGGGC
CTGGAATGGGGTTTAAAATTTTTACCGGGGGAAAAACACACC
CCGTCCATNNNNNNACTCATGGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTATAGAGCCTGGANACAAN
CTTATTAGAGGAAGTTTAACCCTTAAACTCCCCTCTGTGACTTCCTCAGG
TGACACAAAGATGGAGGCATAGGGCTGTGTGGACAGGGACGTGCAGGAGC
AAGTGATCTTAGTCCTGTCCATCTTCAGGACAAGATTTCTGGGGTTTGGA
CTTACCTTGACCCCACCCTTGCCCCAGACAAGCTCCCTAGGTACCACAAC
TCTCTGGCCCCACAGAAGTTACCCATTATTATTGCACTGGGGTTGATCTG
TTATTGTTTTATTTTTAATTTTTTAAAAATGATCTCTTCTTTTTTTTTCC
TTTTTTAAAAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCT
TCAGATGCACCAGAAGGGGACGTCAGATCTCATTACAGATGGTTGTGAAC
ATTACAGATGTGGTTGCTGGGATTTGAACTCAGGAGCTTTGGAAGAGCAG
TTGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGATCTGTTATTTT
ACATCTAGTAGTAGTTGTTTTGTGAAATTGTATAACTTGTGTTCAGGGCA
TGAAGGTTCATAATCTTTTCAAGGCATGAATGTTTATAATCTTCAGGTCC
TCTTGGTGGATCGTTCCCTTAATTGCTAGTTTTGGTTTACATCTGTTTTG
TTAGGCAGTAAAAGTGGCCTGCTTGTTTCCTAGGGCCATGGTCTTCAAAT
ACCTTTATACTAAATATCTTTTTTATACTTTATGCACGTGTCCTATTTTG
CTGNTACTGCCCATTCAGCAAGCGCCTAGAGAAACCTGAAAAAGGAGGCT
CAACTAGAAACTGCTAGGATCAGACTGGCCTGTAAGGCTGGACATAGGAC
TGCCTTGGATATAAGTGGAAGAGGGCCCCGCCCTCGGGGGCAAGCCCCTC
CTCTGGAAAAATGTTAGAGGCTGCATAAAAAACCGTTTAATTTGGCCTGA
AAAGAAACGTTATGTGAATCCCCCTTTTTTCCCTTTGAACCGGCCCCGTC
TCCCCCCAGGATTTTCCCATACGGTGAAGGCCCAAAAAAATAAAAAAAAT
TCCCCCCCCGGGGTGCCTTGTCGCAAAAATTTTTCCTCTACAAGGAGCCA
TAATTTTTCTCATATGGAGTGTTGTTCCTCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_k08.g1 MSMg01no323_k08.g1 CHROMAT_FILE:
MSMg01no323_k08.g1 PHD_FILE: MSMg01no323_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:26 2005
         (636 letters)



>mm_chr3_103038701_103039736
          Length = 1036

 Score = 1154 bits (597), Expect = 0.0
 Identities = 627/637 (98%), Gaps = 1/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgacttcctcaggtgacacaaagatggaggcatagggctgtgtggacagggacgtgcag 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 200 gtgacttcctcaggtgacacaaagatggaggcataggactgtgtggacagggacgtgcag 259

                                                                       
Query: 61  gagcaagtgatcttagtcctgtccatcttcaggacaagatttctggggtttggacttacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagcaagtgatcttagtcctgtccatcttcaggacaagatttctggggtttggacttacc 319

                                                                       
Query: 121 ttgaccccacccttgccccagacaagctccctaggtaccacaactctctggccccacaga 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 320 ttgactccacccttgccccagacaagctccctaggtaccacaactctctgatcccacaga 379

                                                                       
Query: 181 agttacccattattattgcactggggttgatctgttattgttttatttttaattttttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agttacccattattattgcactggggttgatctgttattgttttatttttaattttttaa 439

                                                                       
Query: 241 aaatgatctcttcttttttttt-ccttttttaaaagatttatttattattatatgtaagt 299
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaatgatctcttcttttttttttccttttttaaaagatttatttattattatatgtaagt 499

                                                                       
Query: 300 acactgtagctgtcttcagatgcaccagaaggggacgtcagatctcattacagatggttg 359
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 500 acactgtagctgtcttcagatgcaccagaagggggcgtcagatctcattacagatggttg 559

                                                                       
Query: 360 tgaacattacagatgtggttgctgggatttgaactcaggagctttggaagagcagttggt 419
           ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgagcattacagacgtggttgctgggatttgaactcaggagctttggaagagcagttggt 619

                                                                       
Query: 420 gctcttaaccactgagccatctctccagccctgatctgttattttacatctagtagtagt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctcttaaccactgagccatctctccagccctgatctgttattttacatctagtagtagt 679

                                                                       
Query: 480 tgttttgtgaaattgtataacttgtgttcagggcatgaaggttcataatcttttcaaggc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgttttgtgaaattgtataacttgtgttcagggcatgaaggttcataatcttttcaaggc 739

                                                                       
Query: 540 atgaatgtttataatcttcaggtcctcttggtggatcgttcccttaattgctagttttgg 599
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 740 atgaatgtttataatcttcaggtcctcttgatggatcgttcccttaattgctagttttgg 799

                                                
Query: 600 tttacatctgttttgttaggcagtaaaagtggcctgc 636
           ||||||||||||||||||||||||| |||||||||||
Sbjct: 800 tttacatctgttttgttaggcagtagaagtggcctgc 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)