BAC Information

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BAC

Clone NameMSMg01-323N14
Chromosome3 (Build37)
Map Location 45,436,605 - 45,437,251
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323N14.T7 (MSMg01no323_n14.b1)MSMg01-323N14.TJ (MSMg01no323_n14.g1)
ACCAG442156AG442157
length1,2641,292
length of high quality
(start - end)		693 (93 - 785)699 (95 - 793)
definitionCHROMAT_FILE: MSMg01no323_n14.b1 PHD_FILE: MSMg01no323_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:52 2005CHROMAT_FILE: MSMg01no323_n14.g1 PHD_FILE: MSMg01no323_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNCCGGTTCTNNNNNNNCCATTGGCGCTAAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCACTAATTATATATTTAACCTTGTAAAATCACATAGTCAA
GAAAAATGATTTAGCTCAACGTGGAATTTCTAATATGGGATCATATACAA
GGCAATATTATTTCGATTTTAATTTTAGCTGTAATTTTAATTAATATTTT
TATTTTTGAGAATTTTATAAATGTATATACTATATGCTGCTCGTATTACT
CTACTCTTCAGTCTTTCTAATACCTCCACTCCTCTCCCCAAAATATCTTC
CTCCCAGTTTCATGTTCTCTTCATTTTTATCATAGTATATTGTGCCTGAT
TAATGCTGTCCCTGTGCATGTGACTGATCTATTTTCAAGGGAATCGAACT
ACCATTGGTCACATCCATAAAGAAAATGACTCTCCTTCCCGTTTCAGCCA
CCAACTGCTATTAGCTTCTCAGCTAGGAAGAGAGCATTATGCGGTCCTAC
TTGATCTGTGCTGGAATTTTGATAGGCTTGGTTTTGTGCATGTAACTACA
TCTACCATAAATTCATGAGTGCAATGGCCATATCATGATTAGAAGACAGC
ATTTCCCAGCACTGTTTTATATCCTCCGGGTCTTACATGGTTTCTGTAGC
TTCATCCTTGATGCTCCCTGAGTCTTTTGGGGGGAAAGGTTGCTATAGAT
GATGATGCCCAATTTAAGGCTGTACTCACAGTCACTTTAATCGGNTGTCC
TGTTGCCTAATGGGAAAAATGCTTCTTTGATTAAGGCTGAGGTCAGACCT
ATGAATAAAAATAAATATATGCTGAGAGCAGTCTGGCTGCATGATTATTT
ATCAAAATAAGAGTATTAGAACCCTACCCAGGGCTTATGAGCTCCCAATC
ATGGGCTTTCACCTAGAATTAAAGCATCAAGTTTGGAGGGTGCTTCTGGT
TCCCGCCCTCCAGCCATTGTTGTTCTTTGAACTCCCAAAAAAAAACCCTC
GGCCAAGGAAAACCGAAGGGGCCTGGGCGATTTTGTTCCTCCCAAAAAAA
AACCCTTATTTTGGGCAGGGGAAACCCAAAAAACAAAAGGCGAAGGCTTC
TTTGCTTTTTTTGGGAACTGCCCCCAGAGAAAAAAAAAAACCCGGGGTTG
GTGTTTTCCAATTCCCAAAAGGCCAAAAGGGAAAACAGTGGTTCTAAGGG
AATTTAAATTTAAGGTTTCAGCTTTTTTAAAAAAAAAAATTCCCCGGGGC
AAAAATTTGCCCGC

NNNCCGAATCGTNNNNNNAAGATGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTATGAACCCAGATGCT
GGCTATGATGTGGAGAAAGAGCAATACTCCTCCATTGTTGGTGGGATTGC
AAGCTTGTACAACTACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATT
GGACATAGTACTACCGGAGGATCCCACAATACCTCTCCTGGGCATATATC
CAGAAGAGGTCCCAACCAGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCTTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAAAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGCACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATG
GACCTGGGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCA
CACAATATGTACTCACTAATAAGTGGATATTAGCCCAGAAACTTAGGATA
CCCAAGATATAAGATACAATTTTCTAAACGCATGAAACTGAAGAAGAACG
AAGAACAAAGTGTGGACACTTTGCCCCTTCCTAGAATTGGGAACAAAACA
CCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGTGACGAAAGGATG
GACCATCTAGAGACTGCCATATCCGGGGAATCTATCCCATAATCAGCTTC
CAAACGCTGACACCATTGCACACACTAGCAAGATTTTGCTGAAAGGACCC
AGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCAAGCAAACACAGAA
GTGGATGCTCACAGTGAGCTATTGGATGGATCACAGGGCCCCCAATGGAG
GAGCTAGAGAAAGTACCCAAGAAACTAAAAGGATCTGCAACCCTATAGGT
GGAACAACTTTATGAATAACCAATACCCCCGAAATTCTGAATCGTAACTG
CTATGTATCAAAAAATGGCCTATCCGCCCTCCCTGGAAAGAAAGGCCCTT
GGACTTGCAAATTTATTTCCCCACCCCGGGAAATGCCAGGCCCCAAAAGA
AATGGTGGGTAGGAAAAGAANNGGGNNNNNNNCNNNNNCCCNNNNTTNNC
TCCGCTTATTCTTCTTTCCCCTANCAAATACTTAATTATTCCGTATTTAC
TCAACATTNNCCCTTTTTTATCTCCATTTCTTTATTCTTCCCAAATTCAA
TAACTCTACCTATTCTNTTCATCCAACTTATTTATTCTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_n14.b1 MSMg01no323_n14.b1 CHROMAT_FILE:
MSMg01no323_n14.b1 PHD_FILE: MSMg01no323_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:52 2005
         (693 letters)



>mm_chr3_45436602_45437693
          Length = 1092

 Score =  712 bits (368), Expect = 0.0
 Identities = 584/661 (88%), Gaps = 25/661 (3%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaaaaatgatttagctcaacgtgga-a-tttctaatatgggatcatatacaaggcaatat 66
           ||||||| |||||||| || ||||| | |||||||||| || || ||||||||| |||||
Sbjct: 650 gaaaaatcatttagct-aa-gtggagagtttctaatatcggttcctatacaaggtaatat 593

                                                                       
Query: 67  tatttcgattttaattttagctgtaattttaattaatatttttatttttg-agaat---t 122
           | |||| ||||||||||||| | ||||| |||||||||| |||||||||| ||| |   |
Sbjct: 592 tctttcaattttaattttagttataattgtaattaatatatttatttttgaagattttgt 533

                                                                       
Query: 123 ttataaatgtatatactata--tgctgctcgtatta-ctctactcttcagtctttctaat 179
           |||||    || ||||||||  |  || || || || |||| ||||||||||||||||||
Sbjct: 532 ttata----taaatactatagtt--tgatcata-tacctctgctcttcagtctttctaat 480

                                                                       
Query: 180 acctcc-actcctctccccaaaatatcttcctcccagtttcatgttctcttcatttttat 238
           | | || |||||||| ||||||| | || |||||||| ||||||||||||||||||||||
Sbjct: 479 a-caccaactcctcttcccaaaacacctccctcccagcttcatgttctcttcatttttat 421

                                                                       
Query: 239 catagtatattgtgcctgattaatgctgtccctgtgcatgtgactgatctattttcaagg 298
            |||||||||||||||||||||||||||||||||||||  ||||| ||||||| || |||
Sbjct: 420 tatagtatattgtgcctgattaatgctgtccctgtgca-ctgactaatctattatcgagg 362

                                                                       
Query: 299 gaatcgaactaccattggtcacatccataaagaaaatgactctccttcccgtt-tcagcc 357
           ||||| |||||||||||||||||||||||||| |||||| |||||||||| || ||||||
Sbjct: 361 gaatcaaactaccattggtcacatccataaag-aaatgattctccttccc-ttatcagcc 304

                                                                       
Query: 358 accaactgctattagcttctcagctaggaagagagcattatgcggtcctacttgatctgt 417
           |||||||||||||||||||||| |||||| ||||||| |||| || ||||||||||||||
Sbjct: 303 accaactgctattagcttctcatctaggaggagagcactatgaggccctacttgatctgt 244

                                                                       
Query: 418 gctggaattttgataggcttggttttgtgcatgtaactacatctaccataaattcatgag 477
           |||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |
Sbjct: 243 gctggaattttgataggcttagttttgtgtatgtaactacatctaccataaagtcatgtg 184

                                                                       
Query: 478 tgcaatggccatatcatgattagaagacagcatttcccagcactgttttatatcctccgg 537
           ||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| ||
Sbjct: 183 tgcaatggccatatcatgactagaagacaacatttcacagcactgtttcatatcctctgg 124

                                                                       
Query: 538 gtcttacatggtttctgtagcttcatccttgatgctccctgagtcttttggggggaaagg 597
           |||||||||| |||||||| |||||||||||||| || |||||||||| ||||| |||||
Sbjct: 123 gtcttacatgttttctgtatcttcatccttgatgttctctgagtcttt-gggggaaaagg 65

                                                                       
Query: 598 ttgctatagatgatgatgcccaatttaaggctgtactcacagtcactttaatcggntgtc 657
            ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 64  gtgctataaatgatgatgcccaatttaaggctgtactcatagtcactttaatcggttgtc 5

            
Query: 658 c 658
           |
Sbjct: 4   c 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space:   739006
Effective search space used:   739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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