Query= MSMg01no323_p22.b1 MSMg01no323_p22.b1 CHROMAT_FILE:
MSMg01no323_p22.b1 PHD_FILE: MSMg01no323_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:11 2005
(689 letters)
>mm_chr3_75556444_75557532
Length = 1089
Score = 716 bits (370), Expect = 0.0
Identities = 400/414 (96%), Gaps = 8/414 (1%)
Strand = Plus / Minus
Query: 1 ttttggtttactgagccatcttgctggctcatactcctaacaaacataatgctagagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttttggtttactgagccatcttgctggctcatactcctaacaaacataatgctagagaca 347
Query: 61 atattaatgagtgcctactacttgctaggcactctattaaaattttggatggtttcgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 atattaatgagtgcctactacttgctaggcactctattaaaattttggatggtttcgtgc 287
Query: 121 tttcggcatttctatgtttctaataaaatatgaaacattttgatttgggtcttgtagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tttcggcatttctatgtttctaataaaatatgaaacattttgatttgggtcttgtagatg 227
Query: 181 acacagttgacgtgcagagagtgggatgtgggatgatttgaatgataaatgtctcccata 240
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 226 acacagttgacgtgcacagagtgggatg-------atttgaatgataaatgtctcccata 174
Query: 241 ggtgcaggcatttaaacactccatgcccagcttctgacactgtttggggagacatagttg 300
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ggttcaggcatttaaatactccatgcccagcttctgacactgtttggggagacatagttg 114
Query: 301 gtggagccttgatgaagagatttttgtcaccagcggtaggaggtaaaattatctagtctc 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 113 gtggagccttgatgaagagatttt-gtcaccagcggtaggaggtaaaattatctagtctc 55
Query: 361 tgattcctgcttgaagttgagcgcatgatccttaaacttctttccccatttacc 414
||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 54 tgattcctgcttgaagttgagtacatgatccttaaacttctttccccatatacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_p22.g1 MSMg01no323_p22.g1 CHROMAT_FILE:
MSMg01no323_p22.g1 PHD_FILE: MSMg01no323_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:11 2005
(717 letters)
>mm_chr3_75389198_75390314
Length = 1117
Score = 1348 bits (697), Expect = 0.0
Identities = 712/717 (99%)
Strand = Plus / Plus
Query: 1 ttctctgcccaaaatcgctgcctttgcctaacttatgaatctttcctgcccaagtatctg 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctgttcaaaatcgctgcctttgcctaacttatgaatctttcctgcccaagtatctg 260
Query: 61 aacactccacttaggtatccactacttctctgcccacttccctcatttaatccgtgttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacactccacttaggtatccactacttctctgcccacttccctcatttaatccgtgttgg 320
Query: 121 cctctctgcttttgaaccaactgacccacagtttgcttggccgttgtgcctgtgaatccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctctgcttttgaaccaactgacccacagtttgcttggccgttgtgcctgtgaatccc 380
Query: 181 ggactggaatcccaggattctgaagcttgcttcctcatcttcctccgtggagttctccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggactggaatcccaggattctgaagcttgcttcctcatcttcctccgtggagttctccct 440
Query: 241 taaacctcggcgatttggtgaaagcatcctcatctctgtgtgtaaaattccaacactcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaacctcggcgatttggtgaaagcatcctcatctctgtgtgtaaaattccaacactcct 500
Query: 301 ctacttattcactgtctcctcccattggttctgccttcttgggatattatttatcacatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacttattcactgtctcctcccattggttctgccttcttgggatattatttatcacatt 560
Query: 361 tctcctgtacttttaaaatagggttcactgtggagctttctatagtgtggggtttaccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcctgtacttttaaaatagggttcactgtggagctttctatagtgtggggtttaccaa 620
Query: 421 gcagcatggatagaagtctgtttacagacaaattaatgtccgtaaaaaaatgagaggatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagcatggatagaagtctgtttacagacaaattaatgtccgtaaaaaaatgagaggatg 680
Query: 481 ttgaagtgacccatgcttgagaaccagatctgactgactatttcctgatttcaagaagcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgaagtgacccatgcttgagaaccagatctgactgactatttcctgatttcaagaagcc 740
Query: 541 gtgtagtcccagacagtctattccaagtctccgaatagccactggctaagtaattttgta 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 741 gtgtagtcccagacagtctattccaagtctccaaatagccactggctaagtaattttgta 800
Query: 601 cccacgtcacttactcagcaaatactaggctcagatccttaagtggttatacccagacag 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 801 cccacgtcacttactcagcaaatactaggctcagatccataagtggttatacccagacag 860
Query: 661 ccctgagagagacaggctggttcccgtcctcatggaagtaacactccacacagcaat 717
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 861 ccctgagagagacaggctggttcccgtcctcatggaagtaacaatccacacagcaat 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
