Query= MSMg01no324_c20.b1 MSMg01no324_c20.b1 CHROMAT_FILE:
MSMg01no324_c20.b1 PHD_FILE: MSMg01no324_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:25 2005
(579 letters)
>mm_chr3_104590415_104591392
Length = 978
Score = 1036 bits (536), Expect = 0.0
Identities = 568/579 (98%), Gaps = 1/579 (0%)
Strand = Plus / Plus
Query: 1 gacaaagcacccttcgcctcagttatatgatttatcaaatgtatggtccatgcttccaat 60
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaaaacacccttcacctcagttatatgatttatcaaatgtatggtccatgcttccaat 260
Query: 61 cctgagtgagtgtctacgtatgttgtctgcctggatttgagacagcttcactccacagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgagtgagtgtctacgtatgttgtctgcctggatttgagacagcttcactccacagcc 320
Query: 121 tatgttggcctggaatttgtggtaactctgccccctcgggagtgctgagatgacaggcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgttggcctggaatttgtggtaactctgccccctcgggagtgctgagatgacaggcat 380
Query: 181 gaaccacccggccagctgcaccttcagtagactccatatgacatacatttattctgggaa 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccacccggccagctgcacctgcagtagactccatatgacatacatttattctgggaa 440
Query: 241 atacttgttgaaacctatgatgagcagagtttggttggatggtacagagggcaggtagga 300
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 atacttgttgaaacctatgacgagcagagtttggttgaatggtacagagggcaggtagga 500
Query: 301 gggggagcatggcaggcagcaggcagccagcacctgcctgggtgcctcacaggcctgatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 gggggagcatggcaggcagcaggcagccagcacctgcctgggtgcctcacaggcctgctt 560
Query: 361 gtaaatttgactgatttagtttttgtagcccaggatggcctggaattaactcatagagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaatttgactgatttagtttttgtagcccaggatggcctggaattaactcatagagat 620
Query: 421 ctatctgcctttgcttcttgtgtgtcatcgtggctcacctcactggaaatttctgctgtc 480
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ccatctgcctttgcttcttgtgtgtcatcgtggctcacctcactggaaattcctgctgtc 680
Query: 481 acaaatagtgaagaaaccacttctctgggcttcattttctttacaggcaaaagggaacag 540
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 acaaatagtga-gaaaccacttctctgggcttcattttctttacaggcaaaagggaacgg 739
Query: 541 gtatgggtgaacttattccagagntagagacctgtgtgt 579
||||||||||||||||||||||| |||||||||||||||
Sbjct: 740 gtatgggtgaacttattccagagttagagacctgtgtgt 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space: 550792
Effective search space used: 550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_c20.g1 MSMg01no324_c20.g1 CHROMAT_FILE:
MSMg01no324_c20.g1 PHD_FILE: MSMg01no324_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:25 2005
(632 letters)
>mm_chr3_104760437_104761471
Length = 1035
Score = 998 bits (516), Expect = 0.0
Identities = 535/542 (98%), Gaps = 3/542 (0%)
Strand = Plus / Minus
Query: 1 tatacagaccaggctggcttcaaattcagagatctgcctgtttctgccttctgaatgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tatacagaccaggctggcttcaaattcagagatctgcctgtttctgccttctgaatgctg 483
Query: 61 ggatcatatatgaaccaccactgccagctatgtcttga-tttttttttttttcagaatga 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 482 ggatcatatatgaaccaccactgccagctatgtcttgattttttttttttttcagaatga 423
Query: 120 tctgagacctgtgtactatgcaaagaagagattt--gggggggggagctaacagtcttct 177
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 422 tctgagacctgtgtactatgcaaagaagagatttgggggggggggagctaacagtcttct 363
Query: 178 ctgcattttaagtcctgtttttgttgagttgaaacacttatactaatgagtagacacaaa 237
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctgcattttaagtccagtttttgttgagttgaaacacttatactaatgagtagacacaaa 303
Query: 238 aggaatcagataggccaggtgtagtggctcatgtctttaatcccagtacttggaaggcag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aggaatcagataggccaggtgtagtggctcatgtctttaatcccagtacttggaaggcag 243
Query: 298 aggcaggcaggtctctgtagagagttggaggccagcctggtctacaaagtgagtacagaa 357
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aggcaggcaggactctgtagagagttggaggccagcctggtctacaaagtgagtacagaa 183
Query: 358 cccacgttggaggtatagtggtgagcatagctgccttccaaagtgagtacaggatagcca 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cccacgttggtggtatagtggtgagcatagctgccttccaaagtgagtacaggatagcca 123
Query: 418 gggcttttacacagagaaaccttgtctcaacaaaaaagaaaacgaaacaaaacaacaagc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gggcttttacacagagaaaccttgtctcaacaaaaaagaaaacgaaacaaaacaacaagc 63
Query: 478 aaacaaaacaataaaacaaacacaaacaaacgaacaaaaggtagtgggagatccctgatt 537
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62 aaacaaaacaataaaacaaacacaaacaaaccaacaaaaggtagtgggagatccctgatt 3
Query: 538 ct 539
||
Sbjct: 2 ct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1035
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1025
Effective search space: 637550
Effective search space used: 637550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
