BAC Information

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BAC

Clone NameMSMg01-324G17
Chromosome3 (Build37)
Map Location 54,619,770 - 54,701,399
singlet/doubletdoublet
Overlap gene6030405A18Rik
Upstream geneUfm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524
Downstream geneCcna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324G17.T7 (MSMg01no324_g17.b1)MSMg01-324G17.TJ (MSMg01no324_g17.g1)
ACCAG442572AG442573
length736735
length of high quality
(start - end)		694 (43 - 736)654 (75 - 728)
definitionCHROMAT_FILE: MSMg01no324_g17.b1 PHD_FILE: MSMg01no324_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:44 2005CHROMAT_FILE: MSMg01no324_g17.g1 PHD_FILE: MSMg01no324_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,700,709 - 54,701,399)(54,619,770 - 54,620,423)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGAAGTATCCGCAATGTCACTTATGCTCTTCTGATCATTTTGGTTCTT
TGGGTAAAGAGATTCTAACAAATAAAAGGACAAACATCCCGAATGACAAG
TCAACCTCGTCAGGTCCCGTCCTGCAGAGGTAACTTCATATTCTTTTCTC
CTGGAATAGATTCAAAGACTTTAGACAGCAAAACTACCGAAGTCAAACTC
ACTTGCCTCTCTGCAGGTGCGCTGCCTAACTAGCCACATTGATTCTTGTG
CCTGGAGATAGGCGGAGCAATTAGTAGCAGAACTCACCGGTGGAAAAGAG
GCATCGCCACTAAGCATTGTAGAACTTGGGAGGAATCTGTCTTGTGGAAA
TGTTCAGAGAGACTGGAATACAGGTATACAAATAAAGAAGTTGAGTCTGT
TGAAAGCCTGGCTTCCTATTTTGTTCAGCAATTTAGTCTCCTAGAGAAGA
CACTTTGCCTAAGAGTTCTAAGTATATCTATAGAATCTATAGCTACATAA
TATCCATATATTAAATGCCCATGGGGGTTGGAGAAATGGCACGGTGGATG
AGAGAACATACTGATTTCCAGAGGATCAAAATTCAAGTCCCAGCACCAGC
GTTGGATGGATCACAACCCCAGCTCCAGGGGATTAAATGCTATCTTCTGG
CCCCTTCAGGCACTCACATACACATGGCAAACACAG

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAGCTGAGCGGTGACAAGACATGTG
TTGTAGCGGATATTTAATGATAAAGCCACATGGCCACCATATATTCCCAT
GTGGCTTGGCTGCTGTTTTCCAAGAACTATAACTCCCAGCATCCTGGGGA
ATTACCTGGTCCTTGAGCAGGAGGGTCTTACAGGTTAACTTCTGAGAGTT
ACACCTTCCCTCTCAATGAACATAATCAAGAAAATCCCTTGTAGACATAC
CTAGAGGCCGTCTAGATCTCATCAAGTTGACACTTGAGATTAACCATCGC
AGCTCCACCCTTTGTCAACTTGACATCCAGATACATGAATTTAAATCACG
ATATTCTGTCTCTTCTCCCCAGAGTGCCACATTCTGACAATACGAAATAC
AACCCAACTTCTGAAGTCCTCATAGTCTTTAACAATTCCAACAGGCTAAA
AATCCATGGGATTAGTCTGAGATTCACGGCTACGTCTTAGCTATCCCCAC
CTCTAAAATATAAACCAATTTACATCCTTCCACCATGAAATAAAGAATAA
ACTCTTCTATCCCCAAAATGGGAGGATTGGGGTACAGCAAGGACTGTTTG
GACCCCAAGTTAAATGTAGCCAGGGAAACACCAAGTCCTGCCGCTTTGTG
TCCAGCATCTGGAGCTTTTGATGAAGTAGTGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_g17.b1 MSMg01no324_g17.b1 CHROMAT_FILE:
MSMg01no324_g17.b1 PHD_FILE: MSMg01no324_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:44 2005
         (694 letters)



>mm_chr3_54700669_54701762
          Length = 1094

 Score = 1297 bits (671), Expect = 0.0
 Identities = 686/691 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagaagtatccgcaatgtcacttatgctcttctgatcattttggttctttgggt 63
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ggaattcagaagcatctgcaatgtcacttatgctcttctgatcattttggttctttgggt 672

                                                                       
Query: 64  aaagagattctaacaaataaaaggacaaacatcccgaatgacaagtcaacctcgtcaggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaagagattctaacaaataaaaggacaaacatcccgaatgacaagtcaacctcgtcaggt 612

                                                                       
Query: 124 cccgtcctgcagaggtaacttcatattcttttctcctggaatagattcaaagactttaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cccgtcctgcagaggtaacttcatattcttttctcctggaatagattcaaagactttaga 552

                                                                       
Query: 184 cagcaaaactaccgaagtcaaactcacttgcctctctgcaggtgcgctgcctaactagcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cagcaaaactaccgaagtcaaactcacttgcctctctgcaggtgcgctgcctaactagcc 492

                                                                       
Query: 244 acattgattcttgtgcctggagataggcggagcaattagtagcagaactcaccggtggaa 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acatcgattcttgtgcctggagataggcggagcaattagtagcagaactcaccggtggaa 432

                                                                       
Query: 304 aagaggcatcgccactaagcattgtagaacttgggaggaatctgtcttgtggaaatgttc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagaggcatcgccactaagcattgtagaacttgggaggaatctgtcttgtggaaatgttc 372

                                                                       
Query: 364 agagagactggaatacaggtatacaaataaagaagttgagtctgttgaaagcctggcttc 423
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 371 agagagactggaatacaggtatacaaataaagaagtggagtctgttgaaagcctggcttc 312

                                                                       
Query: 424 ctattttgttcagcaatttagtctcctagagaagacactttgcctaagagttctaagtat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctattttgttcagcaatttagtctcctagagaagacactttgcctaagagttctaagtat 252

                                                                       
Query: 484 atctatagaatctatagctacataatatccatatattaaatgcccatgggggttggagaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atctatagaatctatagctacataatatccatatattaaatgcccatgggggttggagaa 192

                                                                       
Query: 544 atggcacggtggatgagagaacatactgatttccagaggatcaaaattcaagtcccagca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atggcacggtggatgagagaacatactgatttccagaggatcaaaattcaagtcccagca 132

                                                                       
Query: 604 ccagcgttggatggatcacaaccccagctccaggggattaaatgctatcttctggcccct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 131 ccagcgttggatggatcacaaccccagctccaggggattaaatgctatcttctagcccct 72

                                          
Query: 664 tcaggcactcacatacacatggcaaacacag 694
           |||||||||||||||||||||||||||||||
Sbjct: 71  tcaggcactcacatacacatggcaaacacag 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_g17.g1 MSMg01no324_g17.g1 CHROMAT_FILE:
MSMg01no324_g17.g1 PHD_FILE: MSMg01no324_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:44 2005
         (654 letters)



>mm_chr3_54619570_54620623
          Length = 1054

 Score = 1218 bits (630), Expect = 0.0
 Identities = 648/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagctgagcggtgacaagacatgtgttgtagcggatatttaatgataaagccacatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagctgagcggtgacaagacatgtgttgtagcggatatttaatgataaagccacatggc 260

                                                                       
Query: 61  caccatatattcccatgtggcttggctgctgttttccaagaactataactcccagcatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccatatattcccatgtggcttggctgctgttttccaagaactataactcccagcatcc 320

                                                                       
Query: 121 tggggaattacctggtccttgagcaggagggtcttacaggttaacttctgagagttacac 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 321 tggggaattacctggtccttgagcaggagggccttacaggttaacttctgagagttaaac 380

                                                                       
Query: 181 cttccctctcaatgaacataatcaagaaaatcccttgtagacatacctagaggccgtcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttccctctcaatgaacataatcaagaaaatcccttgtagacatacctagaggccgtcta 440

                                                                       
Query: 241 gatctcatcaagttgacacttgagattaaccatcgcagctccaccctttgtcaacttgac 300
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 441 gatctcatcaagttgacacttgagattaaccatcgcagcttcaccccttgtcaacttgac 500

                                                                       
Query: 301 atccagatacatgaatttaaatcacgatattctgtctcttctccccagagtgccacattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccagatacatgaatttaaatcacgatattctgtctcttctccccagagtgccacattc 560

                                                                       
Query: 361 tgacaatacgaaatacaacccaacttctgaagtcctcatagtctttaacaattccaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacaatacgaaatacaacccaacttctgaagtcctcatagtctttaacaattccaacag 620

                                                                       
Query: 421 gctaaaaatccatgggattagtctgagattcacggctacgtcttagctatccccacctct 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 gctaaaaatccatgggattagtctgagattcatggctacgtcttagctatccccacctct 680

                                                                       
Query: 481 aaaatataaaccaatttacatccttccaccatgaaataaagaataaactcttctatcccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatataaaccaatttacatccttccaccatgaaataaagaataaactcttctatcccc 740

                                                                       
Query: 541 aaaatgggaggattggggtacagcaaggactgtttggaccccaagttaaatgtagccagg 600
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaatgggaggattggggtacagcaaggactgtttggaccccaagttaaatgtagccagg 800

                                                                 
Query: 601 gaaacaccaagtcctgccgctttgtgtccagcatctggagcttttgatgaagta 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaaacaccaagtcctgccgctttgtgtccagcatctggagcttttgatgaagta 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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