Query= MSMg01no324_k16.b1 MSMg01no324_k16.b1 CHROMAT_FILE:
MSMg01no324_k16.b1 PHD_FILE: MSMg01no324_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:02 2005
(664 letters)
>mm_chr3_112165309_112166376
Length = 1068
Score = 1075 bits (556), Expect = 0.0
Identities = 597/612 (97%), Gaps = 4/612 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaaatttcc-ctatatctttcattaattctgtttgttaacaatttcaaaactgg 62
||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 815 ggaattcaaatgtccaatatatctttcattaattttgtttgttaacaatttcaaaactgg 756
Query: 63 attattctcacctttacctctcttattttcctttttgtcagtttatacatccttccttat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 attattctcacctttacctctcttattttcctttttgtcagtttatacatccttccttat 696
Query: 123 aagtccttttgcctgtacacagtcatgcttgtgtgaaccccactgagcttaatcagaact 182
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aagtccttttgcctgtgcacagtcatgcttgtgtgaaccccactgagcttaatcagaact 636
Query: 183 ttgccactatctaagagagaatggtgggctactcagtgagcatataactgaagacacatt 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttgccactatccaagagagaatggtgggctactcagtgagcatataactgaagacacatt 576
Query: 243 ctatggttgtaatgctattttctgtgaggaagttggatgaaaattctctgagtctattaa 302
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 575 ctatggttgtaatgctattttctgtcaggaagttggatgaaaattctctgagtctattaa 516
Query: 303 aaagcaaaaaattaaatatggcagtgttctttaaattaattataacacaaaataacttat 362
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 515 aaagcaaaaaattaaatatggcagtgttctttaaattatttataacacaaaataacttaa 456
Query: 363 atattaattactgagagaggtaaaaaatagaaataagtaatctaaaggcaatgaacccta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atattaattactgagagaggtaaaaaatagaaataagtaatctaaaggcaatgaacccta 396
Query: 423 aattattggcaatcagttgaaataaataaaacaatgatacatttatttatacctgttcta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aattattggcaatcagttgaaataaataaaacaatgatacatttatttatacctgttcta 336
Query: 483 acaagaataaattgatgcatgtcatctcatgtgatttctttaataaacataattttaagt 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 335 acaagaataaattgatgcatgtcatctcatgtgatttctttaataaacataattttaact 276
Query: 543 acccttcctacgtatgacaatgtt---actagtgtaattttgttgtttaatcaattacat 599
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 275 acccttcctacgtgtgacaatgtttttactagtgtaattttgttgtttaatcaattacat 216
Query: 600 gttcatatatat 611
| ||||||||||
Sbjct: 215 gatcatatatat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 22
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1068
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1058
Effective search space: 691932
Effective search space used: 691932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_k16.g1 MSMg01no324_k16.g1 CHROMAT_FILE:
MSMg01no324_k16.g1 PHD_FILE: MSMg01no324_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:02 2005
(667 letters)
>mm_chr3_111987150_111988216
Length = 1067
Score = 1251 bits (647), Expect = 0.0
Identities = 662/667 (99%)
Strand = Plus / Plus
Query: 1 acttttatatgtttttaactgttctctataaatatatccatgtttaggttgtgttgctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttatatgtttttaactgttctctataaatatatccatgtttaggttgtgttgctaa 260
Query: 61 aggaaaaacataaattcatcaggtaaaaattactgataattttgttttctcaataaaatg 120
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 261 aggaaaaacataaattcatcaggtaagaattactgataatttcgttttctcaataaaatg 320
Query: 121 ttaatagatatatgaataaagaaatctatgaaaatgcccactgaagaaaatgagatattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatagatatatgaataaagaaatctatgaaaatgcccactgaagaaaatgagatattt 380
Query: 181 ttgagatgtaccatcagttttatcatggaaagtagtggtacgccccattgaaggaacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagatgtaccatcagttttatcatggaaagtagtggtacgccccattgaaggaacaaa 440
Query: 241 ttttactgcataatatgatactttatttaataacatattctattattttatcaatataaa 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ttttactgcataatatgatactttatttaataatatattctattattttatcaatataaa 500
Query: 301 gtacatatttcatgcttagatcatgtacaatttatttatataaatttattagaaaccttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacatatttcatgcttagatcatgtacaatttatttatataaatttattagaaaccttt 560
Query: 361 ggaatatatttataaatatcacttaaaatcattaaaatgttatgtaaaaccagaaagtaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaatatatttataaatatcacttaaaatcattaaaatgttatgtaaaaccagaaagtaa 620
Query: 421 ctaatgacaaattatcttctaatactttaaaatttctacttagaacattttgttttaatg 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 ctaatgacaaattatcttctaatactttaaaatttctacttagaacatgttgttttaatg 680
Query: 481 taattgatactaaattatatattccttagcatattgagctgagtcaattttaacttaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taattgatactaaattatatattccttagcatattgagctgagtcaattttaacttaata 740
Query: 541 tattcttgaaagcacacattattcatctttatgaatctgggaaaaacaggaaattatgta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tattcttgaaagcacacattattcatctttatgaatctgggaaaaacaggaaattatgta 800
Query: 601 caataatttagaaataacaccaaaagcaacatgattcatttttcactgaataattagcat 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caataatttagaaataaaaccaaaagcaacatgattcatttttcactgaataattagcat 860
Query: 661 atgaaat 667
|||||||
Sbjct: 861 atgaaat 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
