BAC Information

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BAC

Clone NameMSMg01-324O05
Chromosome3 (Build37)
Map Location 8,260,532 - 8,260,892
singlet/doubletsinglet
Overlap genenone
Upstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072
Downstream geneLOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324O05.T7 (MSMg01no324_o05.b1)MSMg01-324O05.TJ (MSMg01no324_o05.g1)
ACCAG442917AG442918
length719856
length of high quality
(start - end)
364 (49 - 412)79 (80 - 158)
definitionCHROMAT_FILE: MSMg01no324_o05.b1 PHD_FILE: MSMg01no324_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:18 2005CHROMAT_FILE: MSMg01no324_o05.g1 PHD_FILE: MSMg01no324_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATTGAACCTCATGTATCAGAGAACTGACTCCATTCATAAGT
GCTCCATTCTCACTCCCTGAGCATAGTCAAACTCCAAGGATCTTCCTAGG
ATTCCCACTTTTGTCTTTATAGTTTACATTACAGTTCCTCGACTAATGAG
ATTCTTATTCACATATATCTGAATAACTGAATGTCATAAAGCCTCAATGA
CAAGGGGAAGTCTTTAGGCATATGAGAGGTAGGAAGGTTGGCTAGGAGTA
GAGAGTATCCAGCCAACTTCTCTATTTAAGTGTCACATGAGAAGTGGAAC
GTGTTAATAGGATACAGTAGTGACTGGTGAGAAAAGCTCCTGTAGTAATT
GACTAAGAAGATCGCCCCCGGAGGTTCAATGCCACACACTTTCATATAGC
TCACACAATCACACATTCAAACAAATTCTGAAAGTTGTTTTAAAACCATT
TAATATTTCTAGTCATTTTTCTTCTGTTTTATTTTAAATAATAAATATTC
ATCATCAGGATGAACAATAAATTTCATCATCAGAAAAAGATACAGCAGCA
TAAATCAGAAATAGGAGAATTTTTGCCTTGTCAACAATCAAATATGAATC
CAGATGGTGATAAGACATGAAGATGAGTTGCATCTTCGTATTATAAATAT
GGTACTGGAATTTTAGTGG
CCCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACTAAAGCCATCTGGTCC
TGGGCTTTTTTGTTTGTGTGTGTTTGTTTGTTTGTTTGTGGTTTGGTTTT
GTTTTGGTTGGCTAGGAGACTTCTAACGACTACTTCTATTTCCCTAGGTC
CTTACGAGTTATGAGACTATTCGACACGGCTCATCTGATCCTGACCTATC
TCTGTAACCCGTCATCTGCCCACACCTCTCTCCACTTACTTCCATATGAT
TTTGATGCATCATTACCATCTTTTCCTACCTCAACTTTCACCCGCCTGCC
ACTGATACCTATTCTATCTCCCCCTCCCCTTCCTTTCTCTTCTATCCCCA
CCCTTTTTCCATTTTTTTTCATCCCCCCCCCCCCCCCCTACCTTATTCCA
ACATACTCACCACCACCCTCTCCACTCCCATACATACAACACCCCAAACC
CCTTCCCACGCACCACCTCACTCCTATATCCCCCCCCCCTCATCACCCCC
CCCTTTACTTTCCTCTCACTTAACCTCCCCTCATAACACTAACTAACCAA
ACCAATAACCCCTCTCTTCCCCCCCCCCCCTCTCTTTTTACACCCTTTAT
CCCCTCCCCCCCCATTACACCCCCTCTTTTCTTCTTAATACCCTTTTCAC
TCTCCCAACACCCCACTCACCCCACTTTTATTCACCCTATTTTTACAATC
ACTTCACCCCCACCTTATTTCCCTCCTCCCCACTCACATTCTTCCTTCCC
TACCCCTCCTTACTACTCTTTCACTAAACAATACCCCTCCCCCTATTATA
TTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_o05.b1 MSMg01no324_o05.b1 CHROMAT_FILE:
MSMg01no324_o05.b1 PHD_FILE: MSMg01no324_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:18 2005
         (364 letters)



>mm_chr3_8260329_8261092
          Length = 764

 Score =  667 bits (345), Expect = 0.0
 Identities = 357/361 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctattgaacctcatgtatcagagaactgactccattcataagtgctccattctc 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaattctattgaatttcatgtatcagagaactgactccattcataagtgctccattctc 505

                                                                       
Query: 64  actccctgagcatagtcaaactccaaggatcttcctaggattcccacttttgtctttata 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 actccctgagcatagtcaaactccaaggatcttcctaggattcccactttcgtctttata 445

                                                                       
Query: 124 gtttacattacagttcctcgactaatgagattcttattcacatatatctgaataactgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtttacattacagttcctcgactaatgagattcttattcacatatatctgaataactgaa 385

                                                                       
Query: 184 tgtcataaagcctcaatgacaaggggaagtctttaggcatatgagaggtaggaaggttgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtcataaagcctcaatgacaaggggaagtctttaggcatatgagaggtaggaaggttgg 325

                                                                       
Query: 244 ctaggagtagagagtatccagccaacttctctatttaagtgtcacatgagaagtggaacg 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 ctaggagtagagagtatccagccaacttctctatttaagtgtcacatgagaagtggaaag 265

                                                                       
Query: 304 tgttaataggatacagtagtgactggtgagaaaagctcctgtagtaattgactaagaaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgttaataggatacagtagtgactggtgagaaaagctcctgtagtaattgactaagaaga 205

            
Query: 364 t 364
           |
Sbjct: 204 t 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)