BAC Information

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BAC

Clone NameMSMg01-325C11
Chromosome3 (Build37)
Map Location 58,681,037 - 58,681,541
singlet/doubletsinglet
Overlap geneClrn1
Upstream geneEG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293
Downstream geneLOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325C11.T7 (MSMg01no325_c11.b1)MSMg01-325C11.TJ (MSMg01no325_c11.g1)
ACCAG443115AG443116
length734732
length of high quality
(start - end)
509 (46 - 554)340 (72 - 411)
definitionCHROMAT_FILE: MSMg01no325_c11.b1 PHD_FILE: MSMg01no325_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:38 2005CHROMAT_FILE: MSMg01no325_c11.g1 PHD_FILE: MSMg01no325_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGACCTTACGAAGAGCTGTCAGTGCTCTTAACCGCTGAGCCATC
TCTCCAGCCCCACTCCTTGCTTTTGTAAGTTCACATTTCAATCCCTAAAT
ACTCAAGCCCTGGTTTTTGACCTTTGGAAGATAAAATAGTCCGTCCTGCT
TGATGATGTAGATTAATCGGGTCACGTGATTCAGAGTCTAGTCTCTGAGC
TATGAATTATACTGCTTTTGTATCCAAAGTTTAGGTTTAGACAAAGGTAT
CTGATAACACTCTTTATTTAACTGTGGTCTTTATGGTATTACCATTAATG
AGTTTGTTCAAATTGTATACAACAGTTAGTGGATCGGGAAGATCCACTGT
GCTTTAGCCCTGAAGCTACCATAGTTAAAATAATACAGTGGACATTCTAT
AACGCTCCAAGAGGAATTTAGTTTGAGGAAAGTCATGATTGTACCACAGC
CATGAACAGAGTGAGAGACTTTGTCTTACTTAGAGTTTTACTGCTGTGAA
CAGACACCATGACCAAGGCAAGTCTTATAAAAAAACATTTACTTGGGGCT
GGCTTACAGGCTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAGTATGG
TAGTATCCAGGCATGTATGTCCTAGGCAGAGCTGATAGCTCTATGTCTTC
ATCCCAACGCTGTTACTGGAAGACTGATTTCCTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACCTCTTGTTCTGAAGGCAGATAGGAGA
AGACTGACTTCCAGGCAGCTAGGATGAGGTCTTTTTTTAAAAAAAAAATT
TTAATTTGTGTATGTGAGTACACTGTAGCTGTTTTCAGACATACTAGAAG
AAGGCATCAGATCCCATTACAGATGGTTGTGAGCCACATGTGGTTTACAC
CAATTCCCACCTTGAGGTTGCTGGGAATTGAACTCATGACCTCTGGTAGA
GCAGTCAGTGCTTTTAACCTCTGAGCCATCTTTCCAGCCCTAGTATAAAG
GTCTTAAAGTCCATACCCACAAAGTCATACTTCCTCCAACAAAGCCACAC
CTACTCCAGGGAGCCCACACCTCCAAATAGTGCCACTCTCTGGGACAAGC
ATATACAAACCATCACAGGGGCTATCACTGAGTCATAAGGAAAGACAGTA
CTAAAAGAGAGCCTCTGACTCCATACTAGATAGTAGGCGATTTTTCAAGT
TGGTTCTTCCAGGTGTCCTTATTGGAGAAATTCATAAAAGGTAGAGAAAC
CTCTGCATGCATCTTTTCTCCCAGAGTTTTCAGGTCCCCACCAACATATT
GTTTCTTTCCATATTCTTGGATTTAATGGATGGCCCAGCTATGGCTCCAT
ATTCCTGCTGCGACTCTAGTACTGTCCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_c11.b1 MSMg01no325_c11.b1 CHROMAT_FILE:
MSMg01no325_c11.b1 PHD_FILE: MSMg01no325_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:38 2005
         (509 letters)



>mm_chr3_58680804_58681712
          Length = 909

 Score =  886 bits (458), Expect = 0.0
 Identities = 494/506 (97%), Gaps = 2/506 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggaccttacgaagagctgtcagtgctcttaaccgctgagccatctctccagcc 64
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 738 gaattcaggaccttaggaagagctgtcagtgctcttaacagctgagccatctctccagcc 679

                                                                       
Query: 65  ccactccttgcttttgtaagttcacatttcaatccctaaata-ctcaagccctggttttt 123
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 678 ccactccttgcttttgtaagttcacatttcaatccctaaatatc-caagccctggttttt 620

                                                                       
Query: 124 gacctttggaagataaaatagtccgtcctgcttgatgatgtagattaatcgggtcacgtg 183
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 619 gacctttggaagataaaatagtcagtcgtgcttgatgatgtagattaatcgggtcacgtg 560

                                                                       
Query: 184 attcagagtctagtctctgagctatgaattatactgcttttgtatccaaagtttaggttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 attcagagtctagtctctgagctatgaattatactgcttttgtatccaaagtttaggttt 500

                                                                       
Query: 244 agacaaaggtatctgataacactctttatttaactgtggtctttatggtattaccattaa 303
           |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 499 agacaaaggtatctgataacactctttagttaactatggtctttatggtattaccattaa 440

                                                                       
Query: 304 tgagtttgttcaaattgtatacaacagttagtggatcgggaagatccactgtgctttagc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgagtttgttcaaattgtatacaacagttagtggatcgggaagatccactgtgctttagc 380

                                                                       
Query: 364 cctgaagctaccatagttaaaataatacagtggacattctataacgctccaagaggaatt 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctgaagctactatagttaaaataatacagtggacattctataacgctccaagaggaatt 320

                                                                       
Query: 424 tagtttgaggaaagtcatgattgtaccacagccatgaacagagtgagagactttgtctta 483
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 319 tagtttgaggaaagccatgattgcaccacagccatgaacagagtgagagactttgtctta 260

                                     
Query: 484 cttagagttttactgctgtgaacaga 509
            |||||||||||||||||||||||||
Sbjct: 259 gttagagttttactgctgtgaacaga 234


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)