BAC Information

Click to search

BAC

Clone NameMSMg01-325H01
Chromosome3 (Build37)
Map Location 145,697,974 - 145,698,640
singlet/doubletsinglet
Overlap genenone
Upstream geneClca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2
Downstream geneWdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325H01.T7 (MSMg01no325_h01.b1)MSMg01-325H01.TJ (MSMg01no325_h01.g1)
ACCAG443328AG443329
length709773
length of high quality
(start - end)
664 (46 - 709)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no325_h01.b1 PHD_FILE: MSMg01no325_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:57 2005CHROMAT_FILE: MSMg01no325_h01.g1 PHD_FILE: MSMg01no325_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCCCCCACTCTGCTCAGCTTTCAGGTTCCCAGGCTAGCAGGCT
AGCTTGTCACCTTCTGCTTTAAAAAAAAAAAAAAAAAAAAAGTTACTGGT
TCCTGTCCCATTGGTAAAACTCAGCGAGGCACCGAAGGTGCTGCAAAGTG
AGCCACTGCCTTGTTGAACACCACGGTATCAACATAGTTCAGAAAAAATG
GTAAATATAGTCCTCCTAGAGAGAATAAATAGTGGCCACAAATGTTCAGC
GAGCACAAAAGGATGCAACAATGGGCTAGCATTGGAGGTCAGCATCTGAG
ACGCGAGCACAGCTACCGTGCTGGAGTCACTTAGACGCTTGGGTGCTAAT
CACAGTGAGCTGCTGAGGTGGCTGAAGCTCGCAGTGGTGGACAGAGCAGT
GGTCCTGTTCCATGTGTTCTCGGCACTCCCACTCCAAGACTCCACGCTAT
TTCCCCTACTCTGGAAATTAGACAGGACCTTGTGGTTGTGTTCCTGTTAA
ACCTAAGTTCGTCCATGGGCCCAAGCACCTTAGGGAGGTATGAGGAGAAC
ACACACACACACAGATGTTCTGGCCCTGGCCCAAATAGTTTCCAGTGGGC
AGCATATATAAATCCACACGCTATCCGGTGAAGCTGATTTTGATCTTTCA
AACTACCCC
NCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCATAGGCCTTGACCTTCTGGTAC
AGAATTTAGCATTACAATGCATAGCTACAGGCCAAACCTCACCACCTACT
ATCTGTGGAGAGCTGCAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTG
TGTGTCTGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTC
TGTGTGTGTGTATGTGTGTGTGTATGTGTGTGTGTGTGTCTGTGCGTCTC
TGTGTGTGTGCGTGCGTTTGTCTTTCTCTCTGTTTGTGTGTGCCCGTCCC
TCTTCTTTTTTCTTGTCCCCTCTTTTTTGTTGTCTTTCTCGCCCCCCCCC
TTGTTTTTCTCCTCCCTTTTCTCGTCGTTGTCTTTCTTCGCCCTTTGCTC
TTTTTGTTCCTTTCCTCCCTCTGTCCGTCCTTTTTTTCCGCCCCCCTTTT
TTTTTCTTTTCCCTTCTTCCGTCCTCTTTTCCCTTTTTTTTCCGTTCTCC
GCCTTTCTTCTTTTTCATCTTTTCTCTCTCTTTTTTCCCTATTTTCGGTC
TTGCCTCTACTCCCTTTTTCTTAATATTCCCCAAGTATTTTACCCCTTCC
TTTAATGCCTCTCCTCACTCCCATTTAATAAGCTACCACCAACTGATACC
CACCCCTCTCTCAAAATCCATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_h01.b1 MSMg01no325_h01.b1 CHROMAT_FILE:
MSMg01no325_h01.b1 PHD_FILE: MSMg01no325_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:57 2005
         (664 letters)



>mm_chr3_145697678_145698740
          Length = 1063

 Score = 1174 bits (607), Expect = 0.0
 Identities = 650/669 (97%), Gaps = 10/669 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctcccccactctgctcagctttcaggttcccaggctagcaggctagcttgtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ggaattctctcccccactctgctcagctttcaggttcccaggctagcaggctagcttgtc 904

                                                                       
Query: 64  accttctgcttt--------aaaaaaaaaaaaaaaaaaaaagttactggttcctgtccca 115
           ||| ||||||||        ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 903 acc-tctgctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaagttact-gttcctgtccca 846

                                                                       
Query: 116 ttggtaaaactcagcgaggcaccgaaggtgctgcaaagtgagccactgccttgttgaaca 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ttggtaaaactcagcgaggcaccgaaggtgctgcaaagtgagccactgccttgttgaaca 786

                                                                       
Query: 176 ccacggtatcaacatagttcagaaaaaatggtaaatatagtcctcctagagagaataaat 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ccacggtatcaacatagttcagaaaaaatggtaaatatagtcctcctagagagaataaat 726

                                                                       
Query: 236 agtggccacaaatgttcagcgagcacaaaaggatgcaacaatgggctagcattggaggtc 295
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 725 agtggccacaaatgttcagcgagcacaaatggatgcaacaatgggctagcattggaggtc 666

                                                                       
Query: 296 agcatctgagacgcgagcacagctaccgtgctggagtcacttagacgcttgggtgctaat 355
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agcatctgagacgcgagcacggctaccgtgctggagtcacttagacgcttgggtgctaat 606

                                                                       
Query: 356 cacagtgagctgctgaggtggctgaagctcgcagtggtggacagagcagtggtcctgttc 415
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 605 cacaatgagctgctgaggtggctgaagctcgcagtggtggacagagcagtggtcctgttt 546

                                                                       
Query: 416 catgtgttctcggcactcccactccaagactccacgctatttcccctactctggaaatta 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 catgtgttctcggcactcccactccaagactccacgctatttcccctactctggaaatta 486

                                                                       
Query: 476 gacaggaccttgtggttgtgttcctgttaaacctaagttcgtccatgggcccaagcacct 535
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 485 gacaggaccttgtggttgtgttcctgttagacctaagttcgtccatgggcccaagcactt 426

                                                                       
Query: 536 tagggaggtatgaggagaacacacacacacacagatgttctggccctggcccaaatagtt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 425 tagggaggtatgaggagaacacacacacacacagatgttctggccctggcccagatagtt 366

                                                                       
Query: 596 tccagtgggcagcatatataaatccacacgctatccggtgaagctgattttgatctttca 655
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 365 tccagtgggcagcatatataaatccacacgctatccggtgaagctgacgttgatctttca 306

                    
Query: 656 aactacccc 664
           |||||||||
Sbjct: 305 aactacccc 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space:   688662
Effective search space used:   688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)