BAC Information

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BAC

Clone NameMSMg01-325K04
Chromosome3 (Build37)
Map Location 140,763,389 - 140,763,755
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229883, LOC621343, 4930590L14Rik
Downstream genePdha2, Unc5c, LOC100039923, Bmpr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325K04.T7 (MSMg01no325_k04.b1)MSMg01-325K04.TJ (MSMg01no325_k04.g1)
ACCAG443472AG443473
length724762
length of high quality
(start - end)
404 (47 - 450)367 (70 - 436)
definitionCHROMAT_FILE: MSMg01no325_k04.b1 PHD_FILE: MSMg01no325_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:10 2005CHROMAT_FILE: MSMg01no325_k04.g1 PHD_FILE: MSMg01no325_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCATGGCTAGTCACGGAAATATTTATAATTGAGAGATGCTGATTG
AAGTCAAATCAATTTTCTTATTGAGTGTCACTGGGTATATGAACCACTCT
CTAAGGCAGGCCTCATCCTCAGGGGTAGTGGGACAGTATAAACTACACTT
TTTTTGTTTTTTAATTAATTTGTTTATTTACTTTATATCACATTCACATC
TTTCCCTCGATCTTCTGCCCCCATTTCCTCCCTCCTATCAGTTTTTTTTC
ACAACTTACTTTTAATAAGGGTTCAACGTTCGCTAGTCCAACACCCAGCA
GAGGTAGTGGAAGATAGAAGTTATTAGGATATGCCGGAAGTGGACCTATT
CAACAATAGTTCTTGGGGGGTAAGGCCACCAGTCTTTGGTAGTCCTGTAG
CATACACCATATACAACTAAACAGTTGCAGACCAGTCCGATAATCTGGCA
GATACCACACAGGAACCAGCTATAGCCCAATCTTCTCAGCACACAGATAC
GACGCATGAACCAACAGGTGTAGTTCATTCCTGAATAAAACTTCATGTCT
TGCCCAACAGTCTGAATTGAGGCCCCCGATGTGGGTAGCTGGAACCTCCT
AAGCAGTAATTTGGAAAGTTTCTCTCTGGGGATTATCATCAGGGTAGATT
CATAATAATAATTTAGGGTGAACC
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCGCATTCTTTACTGTCCTTAAGCCTTAAATCAAAT
GTCTCTATTTTTCCATTTATCTATTATTTTCATGTGTAAATTATCGTTTG
ATTTGTATTTGTTTGTTTTACTTTAAAATCATTTTTTACAGAAGAGAGAT
GTTTACTAATAGAATCAGCAAGTTTTGGAGAATCAAGTGGCCTCTTCTTT
CCATTATGTATATTCGAATTGTTTCCTTGGAACACAGGAAGATTTTGTAT
CCTTTGGTTATCTTTCCCTCCCTGAGTATGGCTTTACTTCTTTTATGATG
ATATTTTATGCATTGGATTTCACAGAGTGGTCAACAGTCAACATTGATGC
TTTTTCTGATCGATCAAACCACCTTCCTTTGTTGCTCATTGGCGACCGGA
TCAGTGCCTTTGCTCAAATAACTGTCGGACAAAATACTACTGAAGATTTT
AAAACGAACATTCAATCCTGTTTTATACTAATTTGGAGCCTGCGATTGAA
GCTATAAATATGCATTTTTGAACTGCTTTTTGACCCAAAGTATTTACGTT
TAGATGCTAGGCTTTATTTACCTTCTTGTAACCTACCTTGACTATTTCCC
ATGATTTCTCATGATATAAAACTTTACTTGTTTTGTTAAGTCTTACAAAA
CATTTTCCTGGGGCATTAACCTTTTTCTTGCGTCAATAAACTCTTAATCT
GGTAGTATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_k04.g1 MSMg01no325_k04.g1 CHROMAT_FILE:
MSMg01no325_k04.g1 PHD_FILE: MSMg01no325_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:10 2005
         (367 letters)



>mm_chr3_140763189_140763955
          Length = 767

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttactgtccttaagccttaaatcaaatgtctctatttttccatttatctattattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttctttactgtccttaagccttaaatcaaatgtctctatttttccatttatctattattt 508

                                                                       
Query: 61  tcatgtgtaaattatcgtttgatttgtatttgtttgttttactttaaaatcattttttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcatgtgtaaattatcgtttgatttgtatttgtttgttttactttaaaatcattttttac 448

                                                                       
Query: 121 agaagagagatgtttactaatagaatcagcaagttttggagaatcaagtggcctcttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agaagagagatgtttactaatagaatcagcaagttttggagaatcaagtggcctcttctt 388

                                                                       
Query: 181 tccattatgtatattcgaattgtttccttggaacacaggaagattttgtatcctttggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tccattatgtatattcgaattgtttccttggaacacaggaagattttgtatcctttggtt 328

                                                                       
Query: 241 atctttccctccctgagtatggctttacttcttttatgatgatattttatgcattggatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atctttccctccctgagtatggctttacttcttttatgatgatattttatgcattggatt 268

                                                                       
Query: 301 tcacagagtggtcaacagtcaacattgatgctttttctgatcgatcaaaccaccttcctt 360
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 tcacagagtgggcaacagtcaacattgatgctttttctgatcgatcaaaccagcttcctt 208

                  
Query: 361 tgttgct 367
           |||||||
Sbjct: 207 tgttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)