TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGTTTCCTCCGTGCTTCTTCACAGTTTGTAAGTAACTTTCTAT
TCTGGCACAATTAGATTGTTTTTCAAGTTTTGTAGAATTTAACTGATTGC
CACTTTCTACTGAGAATCTTCTGAACAATGTCAAAGGGAGCTAATCACAT
GGTGCTTTCAAATAACTAATGCAAGATTGACTATAAAATAGTCACAGCGA
ATTCATATAGCAAATTAGATTAAATTGGACTCAGTATAGATCTTTACAAG
CTTTTTACATGTGCACCAGTTTATTAAAATTGACAATAATTCATTGTGAC
ACATTGGTTTGAATTGTTTTTATGATTTTTATGCCTTAATCACAGAAATA
TGTTTTATATTTATTATTACACCCTAGAAGTATTTCTTCATTTTTTCATG
TATGTGCAAAAGTGTACATACATGCCTCTAATGTTTTTAGCAGTTCATGA
AGGTCAGAAGAGGTGGGTTAATTCCCTCGAACTAAAGCTACAGGTCATGG
TAGGCCACCATAGAGGGGCTGAGATGCAAGCTGGAGTCATTCTCAGAGAG
AGTAGCAAAGCTCTTAACCAATTACAGACAGCTCTTCATCCCTGTTCTAT
TACATGTCTAGATATATGTTTCAGCTTTGTACATATATTTAGATGGTTCA
CTGTTGCATCCTTACATTTGCCTATAAATTAT

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGCTTTTTAAGGAGAGAGAGA
GAAGGCATGGAGTTGAACGGGTAGGGAGATGGGGAGAATCTAGGAGGAAA
AAGGGAAGAAAAATAATATTCAGAATATACTCTATGGAAAATGTATTTCC
AGTTAAGAGAAGGAAACACACACCTGGGCATTGACTGCACATGAAGAAGC
TAATAACTCTTGAAAATAAAAATAAAACCTTTCCCATCCATGTCTCTGGG
TTTCTGTTCTCTTGCTACAATACACAGTTGTTGATGACGAAAAGAAAATC
CTACCAAGAACATGGTTTCTGGAAACTCATCTCCAGTTTAAGTGACAAAA
ACTTTGAGTTAATGACATTTACCACGCACTGTGTGCAGGCACACCATTAC
CATTTTTTATTAATGTTCTAATTTTTTTAAACTCAGTATATCAATCATAT
ATAAATTGTTAGAACTGCAAAATATGTTAAGCTGACTTACTGACTTATTT
AATAAAGGTCATTTATTCGTTATTCTTTATGAAAATGCTCAGTGTATTTT
GTTTACCATATAATCTCTGAATTGTCCATATGTATTATTTCCATACCCAC
TGGTTCCCGATGTGTTAGAGATTAGATATCGTATCCCACTTTTATTTTTT
TTACACTTTTTTTTTTTTTAACT

Query= MSMg01no325_p10.b1 MSMg01no325_p10.b1 CHROMAT_FILE:
MSMg01no325_p10.b1 PHD_FILE: MSMg01no325_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:34 2005
         (460 letters)



>mm_chr3_72889156_72890015
          Length = 860

 Score =  812 bits (420), Expect = 0.0
 Identities = 450/460 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattccatgtttcctccgtgcttcttcacagtttgtaagtaactttctattctggcaca 60
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatttcatgtttccttcgtgcttcttcacagtttgtaagtaactttctattctggcaca 260

                                                                       
Query: 61  attagattgtttttcaagttttgtagaatttaactgattgccactttctactgagaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagattgtttttcaagttttgtagaatttaactgattgccactttctactgagaatct 320

                                                                       
Query: 121 tctgaacaatgtcaaagggagctaatcacatggtgctttcaaataactaatgcaagattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaacaatgtcaaagggagctaatcacatggtgctttcaaataactaatgcaagattg 380

                                                                       
Query: 181 actataaaatagtcacagcgaattcatatagcaaattagattaaattggactcagtatag 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actataaaatagtcacagtgaattcatatagcaaattagattaaattggactcagtatag 440

                                                                       
Query: 241 atctttacaagctttttacatgtgcaccagtttattaaaattgacaataattcattgtga 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctttacaaactttttacatgtgcaccagtttattaaaattgacaataattcattgtga 500

                                                                       
Query: 301 cacattggtttgaattgtttttatgatttttatgccttaatcacagaaatatgttttata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacattggtttgaattgtttttatgatttttatgccttaatcacagaaatatgttttata 560

                                                                       
Query: 361 tttattattacaccctagaagtatttcttcattttttcatgtatgtgcaaaagtgtacat 420
           ||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 tttattattacattttagaagtatttattcattttttcatgtatgtgcaaaagtgtacat 620

                                                   
Query: 421 acatgcctctaatgtttttagcagttcatgaaggtcagaa 460
           | ||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 agatgcccctaatgtttttagcagttcatgaaggtcagaa 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_p10.g1 MSMg01no325_p10.g1 CHROMAT_FILE:
MSMg01no325_p10.g1 PHD_FILE: MSMg01no325_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:34 2005
         (344 letters)



>mm_chr3_73054545_73055288
          Length = 744

 Score =  619 bits (320), Expect = 0.0
 Identities = 338/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgctttttaaggagagagagagaaggcatggagttgaacgggtagggagatggggag 60
           ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 674 ctgtggtttttaaggagagagagagaaggcatggagttgagcgggtagggagatgggaag 615

                                                                       
Query: 61  aatctaggaggaaaaagggaagaaaaataatattcagaatatactctatggaaaatgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aatctaggaggaaaaagggaagaaaaataatattcagaatatactctatggaaaatgtat 555

                                                                       
Query: 121 ttccagttaagagaaggaaacacacacctgggcattgactgcacatgaagaagctaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttccagttaagagaaggaaacacacacctgggcattgactgcacatgaagaagctaataa 495

                                                                       
Query: 181 ctcttgaaaataaaaataaaacctttcccatccatgtctctgggtttctgttctcttgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctcttgaaaataaaaataaaacctttcccatccatgtctctgggtttctgttctcttgct 435

                                                                       
Query: 241 acaatacacagttgttgatgacgaaaagaaaatcctaccaagaacatggtttctggaaac 300
           |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 434 acaatacacagttgttgatgacgaaaagaaaatcctaccaagaaaacggtttcaggaaac 375

                                                       
Query: 301 tcatctccagtttaagtgacaaaaactttgagttaatgacattt 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcatctccagtttaagtgacaaaaactttgagttaatgacattt 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)