BAC Information

Click to search

BAC

Clone NameMSMg01-326A11
Chromosome3 (Build37)
Map Location 70,514,148 - 70,514,792
singlet/doubletsinglet
Overlap genenone
Upstream geneRpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868, LOC670542
Downstream geneEG625901, EG667377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326A11.T7 (MSMg01no326_a11.b1)MSMg01-326A11.TJ (MSMg01no326_a11.g1)
ACCAG443760AG443761
length766745
length of high quality
(start - end)
410 (43 - 452)644 (76 - 719)
definitionCHROMAT_FILE: MSMg01no326_a11.b1 PHD_FILE: MSMg01no326_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:39 2005CHROMAT_FILE: MSMg01no326_a11.g1 PHD_FILE: MSMg01no326_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGA
ATTCATGAAGACAACGTGTCATGTCTTTTAATATTTTTAGTTATTTAGGT
GATTAGTATAATTATTTTCAGGTAAACCAATTGTGTCAGCCTGGTCTACA
AAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAAAAACCCTGTCTCANA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAGGTAGTCTTTGACAGTCTCTGCTCTTTTCTTTAGCATAAGTGCT
GGACTGGCCGGGAACTTCAGCTTCTCCTGCCTCATTTCCCCGTCTGTCTA
GGATCACAGGCATGTGCCTCTGTGTATGGACTGAGTTTCTCTTTTAATTA
TGATTTACTCTTTTAACCCCCCCAAAATTTACACTGTAACTATAATTTAT
AGTGCTTAGTCCACACATACATGTGCAAATACAATTATACAATTAATGAA
GAAAGAGACTATGGGTTTGAAGGAAATTAGGGAGGTGTGCATGGGAGGTT
GTACAAAACCATGTCTATTCCTCTCTTAATCCTTCTCTTATCAAATTTAT
TTTACCACTTTTACCATTCCCTTCATAATATATCTAATCTCCATCATCAT
TCTTTTCTCCTCTTTTATTAAATCCATACTTCATTTTCACTTTCTACACT
AAATACACAATCCTAAAATTTTTATCCTCCACCTACTACATTTATTTTCC
TTACTTTTCCTTTAAG
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAGTCTGTCCTGTGACAGACT
TTCTGGATTCACAGACTCTCCATTAATACTCTAGATCCTGCAGATCCTTG
CCTCTTCTCTACCAACACATTGCTGTTTCCCAGACCCCAAGTTAAGCTGA
CACTCTCCTGCTCAACAGCAGGTTACGCTTGCCAGGGGATCAAGAAGGCT
CCTTCAGGCTGATCCCTAGTTCTACAAAAGAACAATAGCTACAGCCTCCC
ATCCCACTTTCCTGGTCTCATATGAACCCCACAGTCTGTCCCCTCCTGGT
CTCTCTCTCTCTAAAACTCTCCCAGTGTCCCAGACACTAGTTTGTGCTGA
CAACCTCATGTTTAACCCCACACACACCTAAGGGAAGACCAGGAAAATTG
CCTTCAGACAATCTGTTCTTCTAGCACCCCCAACAGACCCTATACCACAG
GCTCATCCAAGCTGCAGCCTCGCTTAAACCCTGGCTGTGCCCCCTGTGGA
TCCCACAAACTATACCCTGCTGAACACTCAGAAAGCAGCACCTTGACCTG
TAATCATCCCAATGGCAAATGCCTAGACACCTGTATAATAACACAATTAC
AGTCAGCACATTATGTCTCCACCAGAGCCCAGAAAACTTACTACAGCAGA
CACTGAATATACCAACATTGCTGAAGCACAAGAAAATAAGCATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_a11.g1 MSMg01no326_a11.g1 CHROMAT_FILE:
MSMg01no326_a11.g1 PHD_FILE: MSMg01no326_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:39 2005
         (644 letters)



>mm_chr3_70514090_70515134
          Length = 1045

 Score = 1133 bits (586), Expect = 0.0
 Identities = 630/648 (97%), Gaps = 7/648 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaagtctgtcctgtgacagactttctggattcacagactctccattaatactctaga 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 703 cagaaagtctgtcctgtgacagactttctggattcacagcctctccattaatactctaga 644

                                                                       
Query: 61  tcctgcagatccttgcctcttctctaccaacacattgctgtttcccagaccccaagttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tcctgcagatccttgcctcttctctaccaacacattgctgtttcccagaccccaagttaa 584

                                                                       
Query: 121 gctgacactctcctgctcaacagcaggttacgcttgccaggggatcaagaaggctccttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 583 gctgacactctcctgctcaacagcaggttacgcttgccaggggatcaagtaggctccttc 524

                                                                       
Query: 181 aggctgatccctagttctacaaaagaacaatagctacagcctcccatcccactttcctgg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 523 aggctgatccctagttctacaaaagaacaatagctaaagcctcccatcccactttcctgg 464

                                                                       
Query: 241 tctcatatgaaccccacagtctgtcccctcctggtctctctctctctaaaactctcccag 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tctcatgtgaaccccacagtctgtcccctcctggtctctctctctctaaaactctcccag 404

                                                                       
Query: 301 tgtcccagacactagtttgtgctgacaacctcatgtttaacccc----acacacacctaa 356
           ||||||||||||||||||||||||||||||||||||||||   |    | ||||||||||
Sbjct: 403 tgtcccagacactagtttgtgctgacaacctcatgtttaa---ctataaaacacacctaa 347

                                                                       
Query: 357 gggaagaccaggaaaattgccttcagacaatctgttcttctagcacccccaacagaccct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gggaagaccaggaaaattgccttcagacaatctgttcttctagcacccccaacagaccct 287

                                                                       
Query: 417 ataccacaggctcatccaagctgcagcctcgcttaaaccctggctgtgccccctgtggat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ataccacaggctcatccaagctgcagcctcgcttaaaccctggctgtgccccctgtggat 227

                                                                       
Query: 477 cccacaaactataccctgctgaacactcagaaagcagcaccttgacctgtaatcatccca 536
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 226 cccacaaactataccctgctgaacacccagaaagcagcaccttgacctgtaatcatccca 167

                                                                       
Query: 537 atggcaaatgcctagacacctgtataataacacaattacagtcagcacattatgtctcca 596
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 166 atggcagatgcctagacacctgtataaaaacacaattacagtcagcacattatgtctcca 107

                                                           
Query: 597 ccagagcccagaaaacttactacagcagacactgaatataccaacatt 644
            ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 106 gcagagcccagaaaacctactacagcagacgctgaatataccaacatt 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space:   656190
Effective search space used:   656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)