Query= MSMg01no326_c19.b1 MSMg01no326_c19.b1 CHROMAT_FILE:
MSMg01no326_c19.b1 PHD_FILE: MSMg01no326_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:50 2005
(674 letters)
>mm_chr3_121221550_121222623
Length = 1074
Score = 1234 bits (638), Expect = 0.0
Identities = 662/670 (98%)
Strand = Plus / Plus
Query: 5 gaattcaccaaggtacctggccatacgctttgggaattctgactctacttcccatctccc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaaggtagctggccatacgctttgggaattctgactctacttcccatctccc 264
Query: 65 cacagaagccctgggattatagatggatgttcttctgcatccagctgtacatgagttctt 124
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 cacagaagccctgggattacagatgggtgttcttctgcatccagctgtacatgagttctt 324
Query: 125 aagagtcaagctcatctttatgtttatgcagccagcctttatccactgagccagtgctca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagagtcaagctcatctttatgtttatgcagccagcctttatccactgagccagtgctca 384
Query: 185 gccctgttcatgtgtcttctatggctgcgtctacactcactcaataggttgaacaaacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccctgttcatgtgtcttctatggctgcgtctacactcactcaataggttgaacaaacat 444
Query: 245 agacaactcaaaggcagaagaatttatttgaatcatgacctcaggggtctcagtccacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agacaactcaaaggcagaagaatttatttgaatcatgacctcaggggtctcagtccacat 504
Query: 305 ttgcatgctcccatattcttgagactatcagagtgtttgtggtagagcggattcttcacc 364
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 ttgcttgctcccatattcttgagactatcagagtgtttgtggtagagcagattcttcacc 564
Query: 365 gtgtaccccacaggaagtggtgggagaaaggaagcagggagcagaaggcaggaaggggcc 424
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgtagtcgacaggaagtggtgggagaaaggaagcagggagcagaaggcaggaaggggcc 624
Query: 425 agagacaagagaccctgcaagcttccacttctagcaacctacgtcctttagcgaggtccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agagacaagagaccctgcaagcttccacttctagcaacctacgtcctttagcgaggtccc 684
Query: 485 ctctctggaagtttccttagcctccacagtctcctcaaacagaaccttcacctgagttca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctctctggaagtttccttagcctccacagtctcctcaaacagaaccttcacctgagttca 744
Query: 545 tgagttaaggaagacatgttgcaatgattccataaatgataacacctacatctttatcgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgagttaaggaagacatgttgcaatgattccataaatgataacacctacatctttatcgt 804
Query: 605 ttttatgtttttagaataaacttgtcaatttccacaaaagtcactgggggtgtgcataga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ttttatgtttttagaataaacttgtcaatttccacaaaagtcactgggggtgtgcataga 864
Query: 665 aagcaacgtg 674
||||||||||
Sbjct: 865 aagcaacgtg 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_c19.g1 MSMg01no326_c19.g1 CHROMAT_FILE:
MSMg01no326_c19.g1 PHD_FILE: MSMg01no326_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:50 2005
(653 letters)
>mm_chr3_121378887_121379939
Length = 1053
Score = 731 bits (378), Expect = 0.0
Identities = 393/398 (98%), Gaps = 1/398 (0%)
Strand = Plus / Minus
Query: 1 attccatgggaattcctcttgagatgacatgcctagagctgagcctgacctcaaatgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 attccatgggaattcctcttgagatgacatgcctagagctgagcctgacctcaaatgcta 338
Query: 61 aagtggacctctgagctgtattggaggcactggttctgggatcaacacgaatgtatgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aagtggacctctgagctgtattggaggcactggttctgggatcaacacgaatgtatgtgt 278
Query: 121 gaatatatctagtctttaatttgttcatggatttccttgtaaattctaatctagaggttc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 277 gaatatatctagtctttaatttgttcatggatttccttgtaaattctaatctagaggtcc 218
Query: 181 ttttggcagcaggcagggggttatccaccagagagaattcctcaaatgtgggtttaagcc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 217 ttttggcagcaggcagggggttatccaccagagagaattcctcaaatatgggtttaagcc 158
Query: 241 aatagaaagtctttattagtccactgacaataatactcggtgttggggaatctcagtata 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 157 aatagaaagtctttattagtccactgacaataatactcagtgttggggaatctcagtata 98
Query: 301 gcactctcagttgagcctctcttaggatgagtttttaggcacaaaacccatgttcttggt 360
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 97 gcactctcag-tgagcctctcttaggatgagtttttaggcacaaaaaccatgttcttggt 39
Query: 361 taacatgcttcagccaacaggaatagttagttaaacag 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 taacatgcttcagccaacaggaatagttagttaaacag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
