BAC Information

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BAC

Clone NameMSMg01-326D03
Chromosome3 (Build37)
Map Location 38,835,215 - 38,835,683
singlet/doubletsinglet
Overlap geneFat4
Upstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
Downstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326D03.T7 (MSMg01no326_d03.b1)MSMg01-326D03.TJ (MSMg01no326_d03.g1)
ACCAG443884AG443885
length694684
length of high quality
(start - end)
366 (36 - 401)469 (57 - 525)
definitionCHROMAT_FILE: MSMg01no326_d03.b1 PHD_FILE: MSMg01no326_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:51 2005CHROMAT_FILE: MSMg01no326_d03.g1 PHD_FILE: MSMg01no326_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATT
CTCCGCAATCTTTGATTTAATCCACCTGTTAAATTTCGAATCTGTTGCAT
TTGTAGTCTAACACTTTTCCCACATTTTTTGTTTTTTAATACAGTTTATT
TTTTAGAACAATTTTAGGTTCACAACAGAATGGAATGGAAAGCCCAGAGA
TCTCCCGTGTCCTCTCTGTGGGCTGCAACCCACCTTCTCCTCAGTTACCA
ATTGCTACATTCCTAATCAGAGTGGTCCATTTTGGTTCAACCAATAAATC
TACAGGAAGACAAATGTTTATACTTTATGTCAGCACTCCCAGGGTTGTGT
GATCTGGGCATCTGAATACATTTAAAATGTACTGTCTACACCATGATCAT
ATAATACCCCACTAGTTTCGCTTTGTTAAAAATACACTTGTGTTCCAACT
CATCATTCGTTGGCAACCGACTTTTCATTTCCTCCACATTTGTAACTTCT
CTAGAATGTCATAGCGTTGAAGTTAGTCCAGTGAGTGGCCTTTCCACACT
GGCTTCTCTCAACAGCAATAGACATACAAGTTGCCTCTATATCTATTTAC
AGCTTGAAAAGTTCATTTCCTTTAACGATTATTTTATTTTTATTTATGCG
AACGCGTTTGCATGTGCTTGAGTGCGTCGTGTGCCTGTCCATTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGTTGTCATGAGTCTGGGCAGAGCTTACCCTGTGTTCTGAGCAG
TTGGTTTATCATGCTGCAGGGCCAACTTCCATTACAGTTTGGGAGTGACT
CACATTTTAGTTATGAGAAGGTCTTAACAAGGAACAGCTTACATTTAAAT
GCCCAAATGTCAGGACCACAGCGTTTGGACTATGGAGGCACACAGGGTCA
TGATCAGCCTATGAGCAATATGCTCAGGCATTTATTTATTTATCACATAT
AACCGACCCAATTCCACAGCCTGTGGTTCTAAGAGTGTATGTCTCATCTT
GAAGATGGCCTAGAACTAAGAACTGGGAATCCTTGTCATGGAAATTACAC
TTTGGAGGAAAGACTTCACATCACATACCATTAGAGTCTGGCAGGAGCTG
TGTGTGAGGTGTCAGGAAAGCCAGGGGGGGCTGAAAATTATGTTCTGCCT
CAGCTAACATCACACTAGTGAAAACTGACATCTGTATGTGCATTCTGTGC
ATGCCTGGTGCTCAAGGAAGCCAGAAAAGGGTGTTGGATCCCCTGGTACA
GGAGTTACAAACAGTTAGAAGCTGTTATGTGGCTGTTAGAAACTCAATCC
AGGTCCTCTGTAAGAGCAATGAGCGCTCATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_d03.g1 MSMg01no326_d03.g1 CHROMAT_FILE:
MSMg01no326_d03.g1 PHD_FILE: MSMg01no326_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:51 2005
         (469 letters)



>mm_chr3_38835015_38835883
          Length = 869

 Score =  876 bits (453), Expect = 0.0
 Identities = 465/469 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttgtcatgagtctgggcagagcttaccctgtgttctgagcagttggtttatcatgctg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgttgtcatgagtctgggcaaagcttaccctgtgttctgagcagttggtttatcatgctg 610

                                                                       
Query: 61  cagggccaacttccattacagtttgggagtgactcacattttagttatgagaaggtctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cagggccaacttccattacagtttgggagtgactcacattttagttatgagaaggtctta 550

                                                                       
Query: 121 acaaggaacagcttacatttaaatgcccaaatgtcaggaccacagcgtttggactatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acaaggaacagcttacatttaaatgcccaaatgtcaggaccacagcgtttggactatgga 490

                                                                       
Query: 181 ggcacacagggtcatgatcagcctatgagcaatatgctcaggcatttatttatttatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggcacacagggtcatgatcagcctatgagcaatatgctcaggcatttatttatttatcac 430

                                                                       
Query: 241 atataaccgacccaattccacagcctgtggttctaagagtgtatgtctcatcttgaagat 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atagaaccgacccaattccacagcctgtggttctaagagtgtatgtctcatcttgaagat 370

                                                                       
Query: 301 ggcctagaactaagaactgggaatccttgtcatggaaattacactttggaggaaagactt 360
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 369 ggtctagaactaagaactgggaatccttgtcatggaaattagactttggaggaaagactt 310

                                                                       
Query: 361 cacatcacataccattagagtctggcaggagctgtgtgtgaggtgtcaggaaagccaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cacatcacataccattagagtctggcaggagctgtgtgtgaggtgtcaggaaagccaggg 250

                                                            
Query: 421 ggggctgaaaattatgttctgcctcagctaacatcacactagtgaaaac 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggggctgaaaattatgttctgcctcagctaacatcacactagtgaaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)