BAC Information

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BAC

Clone NameMSMg01-326F10
Chromosome3 (Build37)
Map Location 111,502,378 - 111,502,542
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043190, LOC668712
Downstream geneLOC625585, EG229746, LOC668717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326F10.T7 (MSMg01no326_f10.b1)MSMg01-326F10.TJ (MSMg01no326_f10.g1)
ACCAG443989AG443990
length734788
length of high quality
(start - end)
592 (47 - 638)165 (74 - 238)
definitionCHROMAT_FILE: MSMg01no326_f10.b1 PHD_FILE: MSMg01no326_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:02 2005CHROMAT_FILE: MSMg01no326_f10.g1 PHD_FILE: MSMg01no326_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTGGAACTTTGATGGGGATTGCATTGAATCTGTAGATTTCTT
TTGGCAAGATAGCCATTTTTACAATGTTGATCCTGCCAATCCATGAACAT
GGGAGATCTTTCCATCTTCTGAGATCTTTAATTTCTTTCTTCAGAGATTT
GAAGTTTTTATCATACAGATCTTTTACTTCCTTAGTTAGAGTCACACCAA
GATATATTATGTTATTTGGGACTATTGAGAAGGGTGTTGTTTCCCAAATT
TCATTCTCAGCCTGTTTATTCTTTGTGTAGAGAAAGGCCACTGACTTGTT
TGAGTTAATTTTATATCCAGCTACTTCACCGAAGTTGTTAATCAGGTTTA
GGAGTTCTCTGGCGCAACCTTTAGGGTCACTTATATATACTATCATATCA
TCTGCAGAAAGTGATATTTTGACTTCCTCTTTTCCAATTTGTATCCCCTT
GATCTCCTGTTGTTGTTGATTACTCTGGCTAGGACTTCAAGTACTATGTT
GAATGGGTAGGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTG
GGATGGCTTCAAGCTTCTCACCATTTCCTTTGATGTTGGCTACTGGTTTG
CTGTAGATTGCTTTTTTTTGTCTTTGAGTTCGTTATATTATGGACTACAT
TGACGGATTTTCATATATTAAACCATCCCTGCAT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCTCACGAAATTCAGAGTACAGATTTAAAATCTATG
GCCCTTGTCGAAGGGAAATTATGCTTCTGATTACTCATGATTCTTGTGGT
ATCTGCTTCAACAAGAAGAGCAATGGCTGTGGATGTTTTATGATTGCCAG
AGCTCTTCCCAGGTCAAACAAAAGTGTAGGCAGATGACAATAGGCCAACC
TAATAACTGAAAATGATGAATGGATTTTTGAAAATTANAAGATTTGAATG
GTCACCCAGAATCTGGTCCTGTTCTGATCACTCTAATTTGTATACAGGGA
CCTCATCATCTAAACTAATGCCTAAAATNCCTTCTATTCAAANNTTGGAG
NNNNNNNNNNGGGGTNCCCCACCACACACNTATTACATTTTGCAAGGGAG
CCTAATTTTTATTTTTAACCCNNNNNNNNNNNTTTNNNNNNNNNNAAAAT
TGNTGCCGGGGGAACTTTATGAATCGAGATNNNNNNNNNNNNNNNNNCNN
NNNNNNGGGGGGGGGGGCTTCCTTTNAATTTCTCTTTTTTAAAAAAATAA
ANNNGAAAAAAAAACCCCGGGGGGGGGGGTTCTTAATATTTTTTTTTTTT
NTNNNNNCTCCNNNNNNNTTTTTTTTTTAAAAGGGGTTTTTTTTTTCCCT
GTTGGGAAACACCCTCTTTTATAATCACAAAAAAAATTTTTTTTTCTTTT
TTTAAAAATATTTTACAGAAGAGGCGCTTCCATAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_f10.g1 MSMg01no326_f10.g1 CHROMAT_FILE:
MSMg01no326_f10.g1 PHD_FILE: MSMg01no326_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:02 2005
         (165 letters)



>mm_chr3_111502178_111502742
          Length = 565

 Score =  265 bits (137), Expect = 1e-75
 Identities = 158/165 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcagagtacagatttaaaatctatggcccttgtcgaagggaaattatgcttctgatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 attcagagtacagatttaaaatctatggcccttgtcgaagggaaattatgcttctgatta 306

                                                                       
Query: 61  ctcatgattcttgtggtatctgcttcaacaagaagagcaatggctgtggatgttttatga 120
           |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 ctcatggtttttgtggtatctgcttcaacaagaagagcaatggctgtggattttttatga 246

                                                        
Query: 121 ttgccagagctcttcccaggtcaaacaaaagtgtaggcagatgac 165
           || || |||||||||||||||||||||||| |||||| |||||||
Sbjct: 245 ttacccgagctcttcccaggtcaaacaaaaatgtaggtagatgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)