BAC Information

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BAC

Clone NameMSMg01-326G11
Chromosome3 (Build37)
Map Location 142,804,986 - 142,805,524
singlet/doubletsinglet
Overlap genenone
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326G11.T7 (MSMg01no326_g11.b1)MSMg01-326G11.TJ (MSMg01no326_g11.g1)
ACCAG444038AG444039
length678742
length of high quality
(start - end)
125 (44 - 168)539 (74 - 612)
definitionCHROMAT_FILE: MSMg01no326_g11.b1 PHD_FILE: MSMg01no326_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:06 2005CHROMAT_FILE: MSMg01no326_g11.g1 PHD_FILE: MSMg01no326_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
TTCTCACCTGAGCAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTTCAGGGGACCACCA
AAAGGTTGGCCGGGGATATGGGAAAAAAAAAAAAAAAAACCCCCCTTGGG
GGGGGGGGGGGGTTTGTAACAACCTTGGAAAATTCGGGGGCCCCCAAAAA
ATGGGATATTTCCTTGGGGGGCCGCGAATCCCCCCCCGGGGTAATACCAA
AAAAGCCCCCCCCTTGAAAAAAAAACGTTCCCCTCTTTTTTGTGAAGGTT
TTTTTCCCCCCGGGGGAAAAAGGTGGGGAAAAATTACTATCTCTCCCCCC
TATTGGAGAGGGTGTTTTTTATAATGTGGGGTGTCTTTTCTCCTCGGGGA
GGGGGACTATTTTCCTTTTTATTAAAAAAGATAAGGCTTGTTTTTCTTCT
CCTTTTCCGCGCGGGGGGGTGGGGTGGGGCGGGCTTCTTGTCTGGGGGGG
GGGGGTCCCCATCCCTCTCATTCCCCCTCCTTCCACTTATTTTCGCCGTG
CCCCAGTGTATTAGTGTCTTCCCCCCTT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGGCCAGAGTGCTGGAAGCTAACAC
CAACATTTGTGCTCATCGGAGCACTTTCTAATTAAGAATCGACTGTCAAG
TGGGCCAAGGTGGACCTGCTTTGTCAACAGAGAAATGTACTTCTAAGCTA
GCCTTTTATTTTGTCAGGGTAATCAGTAGGAAAAGAGGGTAAATGTTTTA
AACTTTTGAAAATATTTTTCATTTCATATTCACAATGATATAAAGAGAAT
GCAGAATTTAAATGTGTGTAAAACAATTTATTGATCTAAACTCCTTCAAG
AATCTTAGCCTTTGAAGTATAGTGACAAAGACATTTCAATTATTTTTTTA
ATTTTCTGAAACAGACACCACTATGAAGAAAATTTAGAGTACTTTTAATA
ATAAGAAAACATACACAAGTTAAACCTATTGCTACTACTAAACTAACCGC
TGCTTCTATTTCTCTTCTCCTATCCCAGCTAATTGTATATGAGCACCTTT
ACGGTTAGGGGGTGCAAAGTCAAGAGGGGTGAAACTCAGACCCACTGGTC
CCTGCTGCAGCCTCAGTGCCCCAAAACAGAGGCTAGCACAGACAATAAAT
TTTAACTGAAAAATAAATACTGCATGTGGTGATGTGTAAGACAGGTTTCC
TTTGTGTCGCTGAAAGCTTGCTTTATATGGTTTTACTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_g11.g1 MSMg01no326_g11.g1 CHROMAT_FILE:
MSMg01no326_g11.g1 PHD_FILE: MSMg01no326_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:07 2005
         (539 letters)



>mm_chr3_142804786_142805724
          Length = 939

 Score =  996 bits (515), Expect = 0.0
 Identities = 533/539 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggccagagtgctggaagctaacaccaacatttgtgctcatcggagcactttctaatt 60
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 739 ctaggccagagtgctggaagctaacaccaacatttgtgctcattagagcactttctaatt 680

                                                                       
Query: 61  aagaatcgactgtcaagtgggccaaggtggacctgctttgtcaacagagaaatgtacttc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 679 aagaatcgactgtcaagtgggccaaggtggacctgttttgtcaacagagaaatgtacttc 620

                                                                       
Query: 121 taagctagccttttattttgtcagggtaatcagtaggaaaagagggtaaatgttttaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 taagctagccttttattttgtcagggtaatcagtaggaaaagagggtaaatgttttaaac 560

                                                                       
Query: 181 ttttgaaaatatttttcatttcatattcacaatgatataaagagaatgcagaatttaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttttgaaaatatttttcatttcatattcacaatgatataaagagaatgcagaatttaaat 500

                                                                       
Query: 241 gtgtgtaaaacaatttattgatctaaactccttcaagaatcttagcctttgaagtatagt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgtggaaaacaatttattgatctaaactccttcaagaatcttagcctttgaagtatagt 440

                                                                       
Query: 301 gacaaagacatttcaattatttttttaattttctgaaacagacaccactatgaagaaaat 360
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 439 gacaaagacatttcaattatttttttaattttctgaaacagaaatcactatgaagaaaat 380

                                                                       
Query: 361 ttagagtacttttaataataagaaaacatacacaagttaaacctattgctactactaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttagagtacttttaataataagaaaacatacacaagttaaacctattgctactactaaac 320

                                                                       
Query: 421 taaccgctgcttctatttctcttctcctatcccagctaattgtatatgagcacctttacg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taaccgctgcttctatttctcttctcctatcccagctaattgtatatgagcacctttacg 260

                                                                      
Query: 481 gttagggggtgcaaagtcaagaggggtgaaactcagacccactggtccctgctgcagcc 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gttagggggtgcaaagtcaagaggggtgaaactcagacccactggtccctgctgcagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)