BAC Information

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BAC

Clone NameMSMg01-326J17
Chromosome3 (Build37)
Map Location 36,150,166 - 36,323,513
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
Downstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326J17.T7 (MSMg01no326_j17.b1)MSMg01-326J17.TJ (MSMg01no326_j17.g1)
ACCAG444184AG444185
length720719
length of high quality
(start - end)
674 (45 - 718)641 (76 - 716)
definitionCHROMAT_FILE: MSMg01no326_j17.b1 PHD_FILE: MSMg01no326_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:20 2005CHROMAT_FILE: MSMg01no326_j17.g1 PHD_FILE: MSMg01no326_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,150,166 - 36,150,832)(36,322,871 - 36,323,513)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCCAAAGCTTGGCCTGGAGATTATCAGTCTGTCTGTCTCACCCCCTTT
GCATATTTCTCTGTCTTGTATTGCTTTCTCACAGTCTCTCCCTGTTTTAT
TTCTACTGTTAATAGAAAATTTTATTTGAAGGTCATGAAACTGCATTACT
CATTTTGTTTTAAACAACTAAAAATACATAAATAAAACAGTTTTGTATTA
GAAAATATGGGAACATATATCCATTTTTCTTTTAGGTAACCTTTATATAA
AACATTTATCCCATAAAGGTTATAAAATTCACTATCACTTAGGACATACA
ATTTAAATAAAAACTGTCTCCATCTATAGTCTATGAATTTTTATCAACCT
AAAGAGAGACTTTGGACCCCCAAAGAATAATTTCTGATTGCCCTCTATAT
TCAGTCCCAAGAGACCAACAGTCTACATTTTGTCACTATGCATTTCGTTA
CCTGCACAGTATACATAAATGGAATTACACAAAGGTGAACTCTGTGTCTA
CCTTCAAGTCCCTGACATGATATTTCTGAGATTTATGCATATAGTACATA
TATATTTCTTTAACTTGTAACTAATGCACATTTGAATTGTTTTTGCCTTT
TGGTTTTTGTGAGCAGTCCTTTGACCATTTATATAAAATTATTTGCCCAA
TTACCTGTATTAAAATAAGN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCACCCCATATGTCCTCTGAGGGA
TCAGGTAATCTACCCGAGTTGCCCCCAACAAAATTTTATACTTTCAATTT
TGTTGGTGGAGAAAACCTATTAGATAAGAGAGGAAACAAACAAACAAACA
AACCCACCTAGCTGGAGCACACCAGGCCTCCGGCTCAGATCCTGTTTGGC
CTGGGGAAGAACACCGAAGTGTGGGACTGTGGAGCCCAGCTCAGGCTGGC
CTTCTGTAACTCCCAGCAATGAGCTGTCTTTGCCATTCTATGGGCTACGC
TGAAGGTATAATCAGTACAGAGGCAGCTCGGGGCTTGGATGTAAAGCAAT
AAAAATGGATTTGATGACCACATCTGCATTTCTTCCAATTATAAAATCCA
AACGATTGTGTTTGTCAAATGTGGTATCTAGAATGGGAGGTCGATTTCTG
AGTCTTACACCGATGATAACGGCCATGATAATTCTCTGTACAGCTCTGCC
TTTGTGGAGAAGCAGCAGAAGGCCCATTCAACAATTGCATTGGCACGGTG
TCCTATTTGTGAAGAAACCAAAGGCCTGCATGTGATAACTGCACCTGCTC
GCTGCTCTCTGCAAACAATTCAACCGCCAGCCATATAACGGTGGAAAGCA
ACCGCCCACACTATTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_j17.b1 MSMg01no326_j17.b1 CHROMAT_FILE:
MSMg01no326_j17.b1 PHD_FILE: MSMg01no326_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:20 2005
         (674 letters)



>mm_chr3_36149962_36151035
          Length = 1074

 Score = 1106 bits (572), Expect = 0.0
 Identities = 645/670 (96%), Gaps = 3/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaagcttggcctggagattatcagtctgtctgtctcaccccctttgcatattt 64
           ||||||||||||  ||  ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattccaaagcaaggaatggagattatcagtctgtctgcctcaccccctttgcatattt 264

                                                                       
Query: 65  ctctgtcttgtattgctttctcacagtctctccctgttttatttctactgttaatagaaa 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctgtcttgtactgctttctcacagtctctccctgttttatttctactgttaatagaaa 324

                                                                       
Query: 125 attttatttgaaggtcatgaaactgcattactcattttgttttaaacaactaaaaataca 184
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 actttatttgaaggtcatgaaactgcattactcattttgctttaaacaactaaaaataca 384

                                                                       
Query: 185 taaataaaacagttttgtattagaaaatatgggaacatatatccatttttcttttaggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 taaataaaacagttttgtattagaaaatatgggaacatatatccatttttc-tttaggta 443

                                                                       
Query: 245 acctttatataaaacatttatcccataaaggttataaaattcactatcacttaggacata 304
           |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 444 acctttatgtaaaacatttatcccataaaggttaaaaaattcactatcacataggacata 503

                                                                       
Query: 305 caatttaaataaaaactgtctccatctatagtctatgaatttttatcaacctaaagagag 364
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caatttaaataaaaattgtctacatctatagtctatgaatttttatcaacctaaagagag 563

                                                                       
Query: 365 actttggacccccaaagaataatttctgattgccctctatattcagtcccaagagaccaa 424
           ||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actttggacctttaaagagtaatttctgattgccctctatattcagtcccaagagaccaa 623

                                                                       
Query: 425 cagtctacattttgtcactatgcatttcgttacctgcacagtatacataaatggaattac 484
           ||| ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 cagcctacattttgtcac--tgcatttagttacctgcacagtatacataaatggaattac 681

                                                                       
Query: 485 acaaaggtgaactctgtgtctaccttcaagtccctgacatgatatttctgagatttatgc 544
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 682 acaaaggtgaactctgtgtctaccttcaagtccctgacataatatttctgagatttatgc 741

                                                                       
Query: 545 atatagtacatatatatttctttaacttgtaactaatgcacatttgaattgtttttgcct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atatagtacatatatatttctttaacttgtaactaatgcacatttgaattgtttttgcct 801

                                                                       
Query: 605 tttggtttttgtgagcagtcctttgaccatttatataaaattatttgcccaattacctgt 664
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tttggtttttgtgagtagttctttgaccatttatataaaattatttgcccaattacctgt 861

                     
Query: 665 attaaaataa 674
           ||||||||||
Sbjct: 862 attaaaataa 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no326_j17.g1 MSMg01no326_j17.g1 CHROMAT_FILE:
MSMg01no326_j17.g1 PHD_FILE: MSMg01no326_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:20 2005
         (641 letters)



>mm_chr3_36322543_36323583
          Length = 1041

 Score = 1170 bits (605), Expect = 0.0
 Identities = 633/643 (98%), Gaps = 2/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaccccatatgtcctctgagggatcaggtaatctaccc--gagttgcccccaacaaaa 58
           ||||||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||| 
Sbjct: 971 cccaccccacatgtcctctgaggaatcaggtaatctacccaagagttgcccccaacaaac 912

                                                                       
Query: 59  ttttatactttcaattttgttggtggagaaaacctattagataagagaggaaacaaacaa 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 ttttatactttcaattttgttggtggagaaaacctattagataagagaggaaacaaacaa 852

                                                                       
Query: 119 acaaacaaacccacctagctggagcacaccaggcctccggctcagatcctgtttggcctg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 acaaacaaacccacctagctggagcacaccaggcctccggctcagatcctgtttggcctg 792

                                                                       
Query: 179 gggaagaacaccgaagtgtgggactgtggagcccagctcaggctggccttctgtaactcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 791 gggaagaacaccgaagtgtgggactgtggagcccagctcaggctggccttctgcaactcc 732

                                                                       
Query: 239 cagcaatgagctgtctttgccattctatgggctacgctgaaggtataatcagtacagagg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cagcaatgagctgtctttgccattctatgggctacgctgaaggtataatcagtacagagg 672

                                                                       
Query: 299 cagctcggggcttggatgtaaagcaataaaaatggatttgatgaccacatctgcatttct 358
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 671 cagctcggggcttggatgtaaagcaataaaaatggatttgatgacaatatctgcatttct 612

                                                                       
Query: 359 tccaattataaaatccaaacgattgtgtttgtcaaatgtggtatctagaatgggaggtcg 418
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 611 tccaattataaaatccaaacgattgtgtttgtcaaatgtggtctctagaatgggaggtcg 552

                                                                       
Query: 419 atttctgagtcttacaccgatgataacggccatgataattctctgtacagctctgccttt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atttctgagtcttacaccgatgataacggccatgataattctctgtacagctctgccttt 492

                                                                       
Query: 479 gtggagaagcagcagaaggcccattcaacaattgcattggcacggtgtcctatttgtgaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtggagaagcagcagaaggcccattcaacaattgcattggcacggtgtcctatttgtgaa 432

                                                                       
Query: 539 gaaaccaaaggcctgcatgtgataactgcacctgctcgctgctctctgcaaacaattcaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaaaccaaaggcctgcatgtgataactgcacctgctcgctgctctctgcaaacaattcaa 372

                                                      
Query: 599 ccgccagccatataacggtggaaagcaaccgcccacactatta 641
           ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 371 ccgccagccatataatggtggaaagcaaccgcccacactatta 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)