Query= MSMg01no326_j17.b1 MSMg01no326_j17.b1 CHROMAT_FILE:
MSMg01no326_j17.b1 PHD_FILE: MSMg01no326_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:20 2005
(674 letters)
>mm_chr3_36149962_36151035
Length = 1074
Score = 1106 bits (572), Expect = 0.0
Identities = 645/670 (96%), Gaps = 3/670 (0%)
Strand = Plus / Plus
Query: 5 gaattccaaagcttggcctggagattatcagtctgtctgtctcaccccctttgcatattt 64
|||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 gaattccaaagcaaggaatggagattatcagtctgtctgcctcaccccctttgcatattt 264
Query: 65 ctctgtcttgtattgctttctcacagtctctccctgttttatttctactgttaatagaaa 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctctgtcttgtactgctttctcacagtctctccctgttttatttctactgttaatagaaa 324
Query: 125 attttatttgaaggtcatgaaactgcattactcattttgttttaaacaactaaaaataca 184
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 actttatttgaaggtcatgaaactgcattactcattttgctttaaacaactaaaaataca 384
Query: 185 taaataaaacagttttgtattagaaaatatgggaacatatatccatttttcttttaggta 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 taaataaaacagttttgtattagaaaatatgggaacatatatccatttttc-tttaggta 443
Query: 245 acctttatataaaacatttatcccataaaggttataaaattcactatcacttaggacata 304
|||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 444 acctttatgtaaaacatttatcccataaaggttaaaaaattcactatcacataggacata 503
Query: 305 caatttaaataaaaactgtctccatctatagtctatgaatttttatcaacctaaagagag 364
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caatttaaataaaaattgtctacatctatagtctatgaatttttatcaacctaaagagag 563
Query: 365 actttggacccccaaagaataatttctgattgccctctatattcagtcccaagagaccaa 424
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actttggacctttaaagagtaatttctgattgccctctatattcagtcccaagagaccaa 623
Query: 425 cagtctacattttgtcactatgcatttcgttacctgcacagtatacataaatggaattac 484
||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 cagcctacattttgtcac--tgcatttagttacctgcacagtatacataaatggaattac 681
Query: 485 acaaaggtgaactctgtgtctaccttcaagtccctgacatgatatttctgagatttatgc 544
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 682 acaaaggtgaactctgtgtctaccttcaagtccctgacataatatttctgagatttatgc 741
Query: 545 atatagtacatatatatttctttaacttgtaactaatgcacatttgaattgtttttgcct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atatagtacatatatatttctttaacttgtaactaatgcacatttgaattgtttttgcct 801
Query: 605 tttggtttttgtgagcagtcctttgaccatttatataaaattatttgcccaattacctgt 664
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tttggtttttgtgagtagttctttgaccatttatataaaattatttgcccaattacctgt 861
Query: 665 attaaaataa 674
||||||||||
Sbjct: 862 attaaaataa 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_j17.g1 MSMg01no326_j17.g1 CHROMAT_FILE:
MSMg01no326_j17.g1 PHD_FILE: MSMg01no326_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:20 2005
(641 letters)
>mm_chr3_36322543_36323583
Length = 1041
Score = 1170 bits (605), Expect = 0.0
Identities = 633/643 (98%), Gaps = 2/643 (0%)
Strand = Plus / Minus
Query: 1 cccaccccatatgtcctctgagggatcaggtaatctaccc--gagttgcccccaacaaaa 58
||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 971 cccaccccacatgtcctctgaggaatcaggtaatctacccaagagttgcccccaacaaac 912
Query: 59 ttttatactttcaattttgttggtggagaaaacctattagataagagaggaaacaaacaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 ttttatactttcaattttgttggtggagaaaacctattagataagagaggaaacaaacaa 852
Query: 119 acaaacaaacccacctagctggagcacaccaggcctccggctcagatcctgtttggcctg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 acaaacaaacccacctagctggagcacaccaggcctccggctcagatcctgtttggcctg 792
Query: 179 gggaagaacaccgaagtgtgggactgtggagcccagctcaggctggccttctgtaactcc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 791 gggaagaacaccgaagtgtgggactgtggagcccagctcaggctggccttctgcaactcc 732
Query: 239 cagcaatgagctgtctttgccattctatgggctacgctgaaggtataatcagtacagagg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cagcaatgagctgtctttgccattctatgggctacgctgaaggtataatcagtacagagg 672
Query: 299 cagctcggggcttggatgtaaagcaataaaaatggatttgatgaccacatctgcatttct 358
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 671 cagctcggggcttggatgtaaagcaataaaaatggatttgatgacaatatctgcatttct 612
Query: 359 tccaattataaaatccaaacgattgtgtttgtcaaatgtggtatctagaatgggaggtcg 418
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 611 tccaattataaaatccaaacgattgtgtttgtcaaatgtggtctctagaatgggaggtcg 552
Query: 419 atttctgagtcttacaccgatgataacggccatgataattctctgtacagctctgccttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atttctgagtcttacaccgatgataacggccatgataattctctgtacagctctgccttt 492
Query: 479 gtggagaagcagcagaaggcccattcaacaattgcattggcacggtgtcctatttgtgaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtggagaagcagcagaaggcccattcaacaattgcattggcacggtgtcctatttgtgaa 432
Query: 539 gaaaccaaaggcctgcatgtgataactgcacctgctcgctgctctctgcaaacaattcaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaaaccaaaggcctgcatgtgataactgcacctgctcgctgctctctgcaaacaattcaa 372
Query: 599 ccgccagccatataacggtggaaagcaaccgcccacactatta 641
||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 371 ccgccagccatataatggtggaaagcaaccgcccacactatta 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
