BAC Information

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BAC

Clone NameMSMg01-327F04
Chromosome3 (Build37)
Map Location 80,947,567 - 80,947,934
singlet/doubletsinglet
Overlap genePdgfc
Upstream geneEG626797, Gria2, Glrb, EG626841
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327F04.T7 (MSMg01no327_f04.b1)MSMg01-327F04.TJ (MSMg01no327_f04.g1)
ACCAG444713AG444714
length760759
length of high quality
(start - end)
375 (45 - 419)337 (78 - 414)
definitionCHROMAT_FILE: MSMg01no327_f04.b1 PHD_FILE: MSMg01no327_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:12 2005CHROMAT_FILE: MSMg01no327_f04.g1 PHD_FILE: MSMg01no327_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAATCCGCG
GAATTCTTTTTCCTTTACTTCCTTCAACTTTTGATAATATAACAAGTATG
AAATAATGCCACTTGTGCAACATTCAAGTACGTGTTTAGTTACTTGAAAT
TGTTTGTGATGAATTTCAATTCTGATGAACTTGAGTTCTTTTCACATTGC
CACTCTTGCTTCCTGCTTTTTGAAATGCCCACACATGCCTCTGGTCTAAT
TTTCCTTTGTCTGTTCACCTATTTGGATCTTGTGTCTCCTATTTAAGCCT
TGCTGGCATGTGTTCCTGTGATTGTGCAGGTTTTCACCAGAGCATGTAAT
AGCATGCAGTTCTCACTGACTAAAGAATCATTCTCACAGGGACATGCATA
GCCAGACAGCTTACATATTGTCCCCCTCGANAATCATTCTCACAGGGACA
TGCAGAGCCAGACAGCTTACATGGTGTTAGGCTTGGGCTAAGGATCTCCT
AGGCTGGACTGTCTGATTCTTATGTCTGGCAATACCTGTCTTATTGTATG
GCTTTGTCTTAATTATATGTCCATAGTATATTCTTCTGCTTATTATGACT
TGTCTTGCTGTCTATTTTGACATCATTTTTCTTACTTCTAATTTCCACAT
TTCCTTTCAATTTATTTCTTTTTCCATTTCCTTTCCCATATAATTCTTTC
TTTAATTATTTATACTACACTATTAATAAACATTTTCTACTATATCTTAG
TTTCTATATN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAATCAAGGATTCATACTAGAAC
CTGAGATTAGATAGCCCACGGACCTAGGGTAAAACCAAATAACTACTGTT
CTATTGTAGTATGAGATTGACTCCTAATGACATTCCACTACACTCATAGA
TGATGCCTTGCTCAGCCATCTTCAGAGAAGCTGCCTTCTGCAGCACATGG
GGACAAATACAAAGGCCATATGGCCAGGCACAATGTGGAGTGTTGTAGAC
CTTGGAACAGTCAACCTTAAATGGGATGTCTCCTTCAGATCCCTCCCCTC
TGGGTCCAGAAAACACTGTGGAAGAGGAGGTAGAAAGGCTGTGGAGGATA
AAAAGAATAGAGAGCCTTCTATCCCCACCACGACTTACACACATAGAAAC
ACACACACAGACACACACACACACCGTCACACACATACAATGGAGGTAGC
AACCATAAGTACTTAACTGGTCTATACAGACGAGGTCCTAGAGCTGAAAA
GACAAGTGGACAACATGCACCCACGCTGAACCCAGAAGCTATCTCCAATT
GATAACCACTTGCAAAGGATAAGTTCGTTCCTACAAGGTAGTCTCACTGT
GGAAACCAATTACTCCTTAAGCGTAGGCCATTAACTCAGTTGTAAGTGGC
CAGACTAAACATCATTGGCTCCATGTTTGGTTTGATTGGTTGGTTCGTCA
GATTGCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_f04.b1 MSMg01no327_f04.b1 CHROMAT_FILE:
MSMg01no327_f04.b1 PHD_FILE: MSMg01no327_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:12 2005
         (375 letters)



>mm_chr3_80947361_80948136
          Length = 776

 Score =  642 bits (332), Expect = 0.0
 Identities = 359/368 (97%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctttttcctttacttccttcaacttttgataatataacaagtatgaaataatgcc 66
           ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattgtttttcctttccttccttcaacttttgataatataacaagtatgaaataatgcc 266

                                                                       
Query: 67  acttgtgcaacattcaagtacgtgtttagttacttgaaattgtttgtgatgaatttcaat 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 acttgtgcaacattcaagtacgtgtttagttacttgaaattgtttgtgatgattttcaat 326

                                                                       
Query: 127 tctgatgaacttgagttcttttcacattgccactcttgcttcctgctttttgaaatgccc 186
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 327 tctgatgatcttgagttcttttcacattgccactcttgcttcctactttttgaaatgccc 386

                                                                       
Query: 187 acacatgcctctggtctaattttcctttgtctgttcacctatttggatcttgtgtctcct 246
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 387 acacatgcctctggtctaattttcctttgtctgttcagctatttggatcttgtgtctcct 446

                                                                       
Query: 247 atttaagccttgctggcatgtgttcctgtgattgtgcaggttttcaccagagcatgtaat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atttaagccttgctggcatgtgttcctgtgattgtgcaggttttcaccagagcatgtaat 506

                                                                       
Query: 307 agcatgcagttctcactgactaaagaatcattctcac-agggacatgcatagccagacag 365
           |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 507 agcatgcagttctcactgactaaagaatcattcttaccagggacatgcagagccagacag 566

                   
Query: 366 cttacata 373
           ||||||||
Sbjct: 567 cttacata 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space:   280722
Effective search space used:   280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)