NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGAAGTATCCATGTAAATCTCAAGTTATAGCCAAATCTGGA
AATTACCACAGCAACCTGACTAATTCTTTTGTTCATTAAAATTGAATGAA
AATTTCAAGTATATATGTTCAAAATAAGAAGAGGATGTCGAACCACCTTG
TCAGTTTCCAGAGATACTGTTTGTATTAGACCCACAGATTTAACTTTCAA
AATAAGCATGATGCACAGCCATATCCACTGAAAATTGTGAAAGTTGAGAA
GCCAGCAAAGCTGTTTGACACTGTTCCAGTCCAAACAAATGCTGCAATTG
CTGTCATTCTGTCTCTCACTGTAGATTTTGCTCTCTGTGATTATGATTCA
TTTCATGTCTATTTTTGTTCACCCCCCCCCNCCGANACTTTTTATGAAAG
CCCTAAACTTACTATCCCTTCTGCTCTTACTTTAACAACTTCATCTGGCC
CTATTTATGAATGATCATTTTTATCTCCTTGTACATTGCGTTTTTTATTT
ATTTCAACCCTATCATGTCTCTTTACCCTCTTTTCGTCCCCTCCTATTTT
TTTTTTATCTTATTCGTTTTATCCGCTCCCTTTTTGTCGCTACCCTCCTC
CTTCTACGTATTGGACTCTTTTTCCTCTCTCTTCCCTATGTTTTCTCTCT
TTTTCCATCCCCTCTTTCTCTTTCCTTTCCTTTACACGCCCGTTCCCTCT
TTTTTTATTTACTGCTCCTTCTACCTTTTCTTG

CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCTCTACTGGAAAAGCACAAGCA
GTGGACTCATTTGCTAGACAACATGCTGTATCAAAAGCTGGCATGTCAGG
AGGCAGAATTCAATGCAGTAGTGCCCCTAATATTTAACAGAAATCCAACA
AGCTCAAGTTAAAGCATCAAGTCACAGCACTACACTGGCTCTGAGGAGAA
TGTGTCAGACTGGGATTATGTCAGTAAAACAATTTAATAAAAATGTTCAT
TGACAAGTAGTCCTCTAAATAGCTATACAACATGAAAATGATCAGTTTAT
TTTCCTGTTAGGGAGGGAAACGCAGACGGAATATCAAACATTGGAGTAGA
ACCAACTCTCAGGGAGCTACCCTGCAAAACTGCAAATGTACATCAAAGTG
AATACAATTTTTTGTGTCTAATGGAATCAGTTACATAATAACAAAAGTAT
TCATCAAAAGGTGGATACTCAAAATTTATATTTTATAAGATATCCAGTTA
TTAATGACCTAGCTCTTTGTTGCTTCAGTGTACTCCTAGTTAGGTTATAC
TCACAATATTCAGTTCTGTAGGGCATAATGATGAAGAAATTCATATACCA
CCTACTGTAAACTCTCTCATAATACTTAATGAAAGAAATAAGGCATGGAG
AATTGTGTCAGCACATTTCTTTTTTGTGTGTAACTGCAACAA

Query= MSMg01no327_i09.b1 MSMg01no327_i09.b1 CHROMAT_FILE:
MSMg01no327_i09.b1 PHD_FILE: MSMg01no327_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:26 2005
         (359 letters)



>mm_chr3_124150815_124151573
          Length = 759

 Score =  601 bits (311), Expect = e-176
 Identities = 344/355 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggaagtatccatgtaaatctcaagttatagccaaatctggaaattaccacagc 64
           |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 559 gaattcaggaagtataaatgtaaatctcaagttatagccaaagctggaaattaccacagc 500

                                                                       
Query: 65  aacctgactaattcttttgttcattaaaattgaatgaaaatttcaagtatatatgttcaa 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aacctgcctaattcttttgttcattaaaattgaatgaaaatttcaagtatatatgttcaa 440

                                                                       
Query: 125 aataagaagaggatgtcgaaccaccttgtcagtttccagagatactgtttgtattagacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 aataagaagaggatgtcgaaccaccttgtcagtttccagagatactgtttgtattggacc 380

                                                                       
Query: 185 cacagatttaactttcaaaataagcatgatgcacagccatatccactgaaaattgtgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 379 cacagatttaactttcaaaataagcatgatgcacagccatatccactaaaaattgtgaaa 320

                                                                       
Query: 245 gttgagaagccagcaaagctgtttgacactgttccagtccaaacaaatgctgcaattgct 304
           || ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 319 gtcgagaagccagcaaagctgtttgacactgttccagtgcaaacaaatactgcaattgct 260

                                                                  
Query: 305 gtcattctgtctctcactgtagattttgctctctgtgattatgattcatttcatg 359
           ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 259 gtcattctgtctctcactgtagattttgctctctgtgattatgatacattccatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no327_i09.g1 MSMg01no327_i09.g1 CHROMAT_FILE:
MSMg01no327_i09.g1 PHD_FILE: MSMg01no327_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:26 2005
         (343 letters)



>mm_chr3_123982036_123982778
          Length = 743

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctctactggaaaagcacaagcagtggactcatttgctagacaacatgctgtatcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctctactggaaaagcacaagcagtggactcatttgctagacaacatgctgtatcaaa 260

                                                                       
Query: 61  agctggcatgtcaggaggcagaattcaatgcagtagtgcccctaatatttaacagaaatc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 agctggcatgtcaggaggcagaattcaatgcagtagtgcccctaatatttaacaaaaatc 320

                                                                       
Query: 121 caacaagctcaagttaaagcatcaagtcacagcactacactggctctgaggagaatgtgt 180
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 321 caacaagctcaagttaaagcatcaagtcacagcactacactggccctgaggagaatgtat 380

                                                                       
Query: 181 cagactgggattatgtcagtaaaacaatttaataaaaatgttcattgacaagtagtcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagactgggattatgtcagtaaaacaatttaataaaaatgttcattgacaagtagtcctc 440

                                                                       
Query: 241 taaatagctatacaacatgaaaatgatcagtttattttcctgttagggagggaaacgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatagctatacaacatgaaaatgatcagtttattttcctgttagggagggaaacgcag 500

                                                      
Query: 301 acggaatatcaaacattggagtagaaccaactctcagggagct 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acggaatatcaaacattggagtagaaccaactctcagggagct 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)