BAC Information

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BAC

Clone NameMSMg01-327M06
Chromosome3 (Build37)
Map Location 19,600,094 - 19,600,405
singlet/doubletsinglet
Overlap genenone
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh
Downstream geneLOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327M06.T7 (MSMg01no327_m06.b1)MSMg01-327M06.TJ (MSMg01no327_m06.g1)
ACCAG445036AG445037
length772770
length of high quality
(start - end)
190 (44 - 233)312 (73 - 384)
definitionCHROMAT_FILE: MSMg01no327_m06.b1 PHD_FILE: MSMg01no327_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:44 2005CHROMAT_FILE: MSMg01no327_m06.g1 PHD_FILE: MSMg01no327_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGCTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTCGGATATTAGTTCCCC
TATCTGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTT
TTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTAT
GATGTCCCATTTATCGATTCTTGATCTTACAGTACATGCCATTGCTGTTC
TATTCAGGAATTTTTCCCCTGTGCCCTTATCTTCAAGGTTTTTCCCCACT
TTCTCCTCTATTTGTTCCATTGTCTCTGGCTCTATGTGGAGTTCCTTTAT
CCTCTTACCTTCCTTCGGGCGAAACAAATCCTCCAACGGATTACTTTGTT
TTCTTCTCCCTGACCACCCTTTTCCCGTGTTTTTCCCCTATTTTACCTTT
TTTTGTTCTTTCTCCTCCCTCTTTTTACCTTCCTGTTCTATTCCCTTTTT
TCCTTTTCGCCCCTTCCTTTTCTTTTTTCTTCCTTTCTCCTTCCTTTTTC
TCCTTCCCTCCTTTTTCCACCCTCTTCTTTTATTTTTTCTCCTTTCTATC
CTTTTCGCTTTTTTTTCTTTCTTTTTCTTTTCACTCTTACACTACTCTTG
TTACCTTTTCTCTTTTTTATCTCACCCTTCTTATTTTATCTTTCCCCCTC
TCCCCATTTTTTCCTCCTTCCC
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACATATTGAACTTCTAATGCCCAGGATC
TTAGAAGGAACTGATTTGAGAAATGGCCTTTCCAAGGGTAATTCAGTAAA
ATTAGGTCAAAGGCAAATGCTTGTGCCATATTTTAAGCTGTTGGGAGTAA
TAGCTGTGGATTTGCTCTAAGGATTGTATTATGTTAATTGGGTTCCAAAA
TTTGCATGAGAATCTGAAGCATGTAAGATTCTGAGGGTCCCTGCTCACAG
TTGGTTTGGATTGGTAAATAAAGTTGCTGGAGGTCAATGGCTGGGCAGGG
AGGGAGACAAAGGCAAGACTTTAGGATTCGCTGGCAAGGGAACAGATAGA
GGACGTAGGAGAAAGATTTACANCCCCCCCAAAGGAGAAAGACCAGGNCT
GAGAAGTGTATGACAGAAAGACTGCTAACATGTACGAGTCCGGTATCCTG
CCCCAGAATGGTACGCAAGCCTAGCGCATGGTGCGCCTTAGGATGCCTTA
TTTCCTTTATCTCTTTTTCCTCTCTTCCTTTTTCTTTTCTCTCTTTTTCC
CCCTTTTTTTCCTCCCCCTCTTTTTTTCTTTTTCCCCTCAGCCTCCTAAT
TTATCTCTTTCCTATTTATCCATACTCCACCTCTTTCTTCCTTTTTTTCC
CCACTTTTTTTTTCCCCCGTTCTCCTTCAATTTCTTTTCTCTCCTCTTCC
TCTTTCTTTCCTCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_m06.g1 MSMg01no327_m06.g1 CHROMAT_FILE:
MSMg01no327_m06.g1 PHD_FILE: MSMg01no327_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:44 2005
         (312 letters)



>mm_chr3_19600076_19600787
          Length = 712

 Score =  526 bits (272), Expect = e-154
 Identities = 302/312 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatattgaacttctaatgcccaggatcttagaaggaactgatttgagaaatggcctttc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 acatattgaacttctaattcccaggatcttagaaggaactgatttgagaaatggcctttc 271

                                                                       
Query: 61  caagggtaattcagtaaaattaggtcaaaggcaaatgcttgtgccatattttaagctgtt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 270 caagggtaattcagtaaaattaggtcaaaggcaaatgcttgtgccatattttaagcggtt 211

                                                                       
Query: 121 gggagtaatagctgtggatttgctctaaggattgtattatgttaattgggttccaaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gggagtaatagctgtggatttgctctaaggattgtattatgttaattgggttccaaaatt 151

                                                                       
Query: 181 tgcatgagaatctgaagcatgtaagattctgagggtccctgctcacagttggtttggatt 240
           |||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 150 tgcatgagaatccgcagcatgtaagactctgagggtccctgcacacagttggtttggatt 91

                                                                       
Query: 241 ggtaaataaagttgctggaggtcaatggctgggcagggagggagacaaaggcaagacttt 300
           ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||
Sbjct: 90  ggtaaataaagttgctggaggccaatggctgggcagggagggacacagaggcaagacttt 31

                       
Query: 301 aggattcgctgg 312
           ||||||| ||||
Sbjct: 30  aggattccctgg 19


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)