ATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCTTGAGCGGCGC
GGAANTCTCACATGTCACACACACAGTGAATACCGTTCCAGAGAGTTGAG
ACAAGTCAAGAGTCTGGACACACTTTAAGGGCAGAATATAGACAACATTC
TGATACATTCTCCACATGCAGTGGGGAAAAGCTAGTTTTCCTAACTCATC
AGAGTAAGTGTGTGAATCGTGGAAGAATTTTCCCCGAATGTTCTTTCTGG
AAATTGGACCAGTGGATTGCAATATGAGAAAATGAAGGACAAAAAAAGCT
CTTTGGGGTTTACCAAGGCTTTATTACGTTTATACTATCCCAAGTGTATT
TGAAACATCGTCAGGTGTATATGCCCCCCCAGAGCGAGAGATTATACCAT
GCCCTTACCTGCGTTTGTTTGACCCCCCCACCCCTCTTGTCCCCANAATT
ACATGTGCTTCGACCCCGGTATACCCAATATGATCTCCCATACTACCTTA
TTGTGTTGCCCTATACCTCCCTCCTTTTATCATTCCTTTTTTCCTTTCCC
CTTTTTGTCCTTTTTCCCCCCTTTTGTTTGTTTTTCTTCCTTATCCTCCG
TCCCTTTTTTTCCTTCCTTTCCTTTTTTGCCCCACCTTCTTTAATGTATC
TTCTTCCTGTCATTGCCTTTTCCCGCGCTCTACACGGTAGGTTCCTTTTC
TTTCTTTCACTAACACTATCTTCGTTTCATTTGTCCTTCTCATCCTTCTA
TATTCATTCATTTCCCCCTCTCTGTCATTTTTTGTGCCTCCTTCGC

CCGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTAGTCATCCAAGATCACTAA
GTAGAAGATGCAGGACCTATATTGCAAAGAAAACATTGAAGAAAATAAAT
GCCAAACATATAGAAATATTGGAACAGTGCACCATCATTTCTGAGGAAAA
TTTAAGTTTTCATTAAGGATTGTGAATGCTTCTTCTTAACAAGGCAAAAT
AGCAAAATACCAGTAGTCACTACATTAAACTCAGAGGGAACGAGGCAGGA
GACGCTGGTACTTGGAGCCAGCTCATCTCATGCACTGAACTTTTACATTT
ACATCTCAGTCTATTAAATATGGAAAGGGAAAACTTTTCCTTTCTCAGAA
AAGATCAAGATTGTGTTTGTGTTAACANCCCCCACANAGAGNGNAATTTA
GCCTTATGTATCGCTGCAATGAGCATCATCTATCCCTGTATTCCTTACAG
GAATCTGTCTCACTTCCTGCAAGTTAACTTTCCTTCCCTCCGGATATCTC
CCACCCTTTACTACCACTCTGTATTTCTGCTCTCCCTAATTCCCCCTTTT
TTCCTCCTCCCACTTTTTTCATATACCCCTGCCCGCTGCTCATTTCTCTT
TCCTCTCGTCCCTTCTCGTCCTCTATTTAATTTTTTCTCACTTTTTTTTA
TACCCTCTTCCTCCATTACTTTCTTACTCCTCTCGTTACTACTTTCTTCT
G

Query= MSMg01no327_m12.b1 MSMg01no327_m12.b1 CHROMAT_FILE:
MSMg01no327_m12.b1 PHD_FILE: MSMg01no327_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:45 2005
         (177 letters)



>mm_chr3_39294049_39294625
          Length = 577

 Score =  342 bits (177), Expect = 6e-99
 Identities = 177/177 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaataccgttccagagagttgagacaagtcaagagtctggacacactttaagggcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaataccgttccagagagttgagacaagtcaagagtctggacacactttaagggcagaa 260

                                                                       
Query: 61  tatagacaacattctgatacattctccacatgcagtggggaaaagctagttttcctaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagacaacattctgatacattctccacatgcagtggggaaaagctagttttcctaact 320

                                                                    
Query: 121 catcagagtaagtgtgtgaatcgtggaagaattttccccgaatgttctttctggaaa 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catcagagtaagtgtgtgaatcgtggaagaattttccccgaatgttctttctggaaa 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no327_m12.g1 MSMg01no327_m12.g1 CHROMAT_FILE:
MSMg01no327_m12.g1 PHD_FILE: MSMg01no327_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:45 2005
         (296 letters)



>mm_chr3_39483331_39484026
          Length = 696

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttagtcatccaagatcactaagtagaagatgcaggacctatattgcaaagaaaacat 60
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 496 cagttagtcatccaagatcactaagtagaagatacaggacctatcttgcaaagaaaacat 437

                                                                       
Query: 61  tgaagaaaataaatgccaaacatatagaaatattggaacagtgcaccatcatttctgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgaagaaaataaatgccaaacatatagaaatattggaacagtgcaccatcatttctgagg 377

                                                                       
Query: 121 aaaatttaagttttcattaaggattgtgaatgcttcttcttaacaaggcaaaatagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaaatttaagttttcattaaggattgtgaatgcttcttcttaacaaggcaaaatagcaaa 317

                                                                       
Query: 181 ataccagtagtcactacattaaactcagagggaacgaggcaggagacgctggtacttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ataccagtagtcactacattaaactcagagggaacgaggcaggagacgctggtacttgga 257

                                                                   
Query: 241 gccagctcatctcatgcactgaacttttacatttacatctcagtctattaaatatg 296
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gccagctcagctcatgcactgaacttttacatttacatctcagtctattaaatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)