BAC Information

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BAC

Clone NameMSMg01-328F06
Chromosome3 (Build37)
Map Location 141,628,117 - 141,628,461
singlet/doubletsinglet
Overlap geneBmpr1b
Upstream genePdha2, Unc5c, LOC100039923
Downstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328F06.T7 (MSMg01no328_f06.b1)MSMg01-328F06.TJ (MSMg01no328_f06.g1)
ACCAG445453AG445454
length805838
length of high quality
(start - end)
347 (70 - 416)151 (73 - 223)
definitionCHROMAT_FILE: MSMg01no328_f06.b1 PHD_FILE: MSMg01no328_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:27 2005CHROMAT_FILE: MSMg01no328_f06.g1 PHD_FILE: MSMg01no328_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGG
AATTCACTTATTGTATGCCTTTATGCCGGTTTTATTATGCCAAACTAACA
AAGCAGTCAGAATTTCTCTTCAATTTATGTTGCAGGATATACAATATAAT
GAGTCCAGCAAGTAAGCTCTGGGGATGACTGAGTTCTCTGTCTCATGTAG
GGGTATACTATGAAGTTTTGCCATTAGAATTCAAAAGGAGGCATACCTTG
ATGTTTCTGTTTGTCATAAGGAAGATTAGTTCTTTGTAGTGAACTTAGAT
TTGTAGATTATTATTGCCAGGCATGATACTGAGTTACTGATTTCAGTGCT
GGTACTCTCGAAATGTTATTTCTTTGTCCTACGAGGAAGATGAATTCTTA
GAAATAGTTAGATTGTTTTTTCCCCCCCCCAGGGTCACAGGTATTATTTG
TCACCAGGTTTCTGATTTCATCGCTGGCACTTTTGGAATGAAGTCATTTC
TGGCCAGTCTTTTTGTCTAATTCTGGCTTATGTTCTTCTTACTTATACCT
CCGTCGTTCTTGTTTTTCGATATTCGTCTATTCTACTCTGTTTTCCTTTC
TTTTTATTCCTTTTCACAATTATCAATTTTCCCTATGCTCTAACAATTTA
TATGTTATTTATTGACCTCCTTCTTCTCTGTTCAATCCTTTTTTCTTTTA
TTCTTATCTTTTATCTATCTTCTTTCTTATATTCTTATCTATATGTCACC
TCATATCTATACTAGTTCTTTTGTATCCTACATTCCCCTTTCTCTATATT
TTTTG
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCAGGAATTCAGGGACATATTTCTGTTCTATCTG
CCACTATCCATGGTGGCTGGCATGTGTCCTTGTTAGCATAACCATGTTCC
CTTCCCCCTCCTTCCCAGGATGTTGTGGTGGTTGGGGAGGAGAACTTCAC
AACCCCCTGTTACATTCAGCTGGATGCAGAGGCTTGCCATATCCTCACAG
AGAACCTCAGTACCTATGCCCTGGTTGGACAGTCCACCACCATAGCAGTT
GTCATGCGTCTTAAACTGTCACTTCTTTTTTTTCCTTTGTTGTTTTTCCC
CGTTAGTAAATATTTATAATTTTATTGCCCCGCACGACTTACTTGCTTTC
CTTTGAATTATAATGTTTTTTTACTCCCCCCCCCCCACATTAAATGTTAA
CCATGTTAAAATTATACCTTGTAACTCGACACTTAATTAACCTTGATTTT
AATCTATTCTACCACATTCTTCCTACATCTTCAACGAACAATTTTCTCAA
TCCCTTTACGCCTTTTTCGCTCACCTTGCACGCATCTCTTTTCTTCTTTT
TAGAATAACCTCTTCACCATTCTCCGTTTTGCTATTTTACTTTCACATAC
ATCTGTCTTTCCCTTAATCCATTTTCCTTCCCTTTCTTCTATTTCTTCTC
CCCCTCTTTTTTTGTGTGCTCGCATACTGCACCACGTTATTAGTGCTCCT
TATTTTCTCCTTACATTCCTCTACTTCCCCTTCCTCCACTTTTTCCTTCT
TTCTCCACGTTTTTTCATATTCCCACTTTTTATATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_f06.b1 MSMg01no328_f06.b1 CHROMAT_FILE:
MSMg01no328_f06.b1 PHD_FILE: MSMg01no328_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:27 2005
         (347 letters)



>mm_chr3_141627917_141628662
          Length = 746

 Score =  638 bits (330), Expect = 0.0
 Identities = 342/346 (98%), Gaps = 1/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatgccggttttattatgccaaactaacaaagcagtcagaatttctcttcaatttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tttatgccggttttattatgccaaactaacaaagcagtcagaatttctcttcaatttatg 486

                                                                       
Query: 61  ttgcaggatatacaatataatgagtccagcaagtaagctctggggatgactgagttctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttgcaggatatacaatataatgagtccagcaagtaagctctggggatgactgagttctct 426

                                                                       
Query: 121 gtctcatgtaggggtatactatgaagttttgccattagaattcaaaaggaggcatacctt 180
           || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 425 gtttcatgtaggggtatactatgaagttttgcaattagaattcaaaaggaggcatacctt 366

                                                                       
Query: 181 gatgtttctgtttgtcataaggaagattagttctttgtagtgaacttagatttgtagatt 240
           ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 365 gat-tttctgtttgtcataaggaagattagttcttagtagtgaacttagatttgtagatt 307

                                                                       
Query: 241 attattgccaggcatgatactgagttactgatttcagtgctggtactctcgaaatgttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 attattgccaggcatgatactgagttactgatttcagtgctggtactctcgaaatgttat 247

                                                         
Query: 301 ttctttgtcctacgaggaagatgaattcttagaaatagttagattg 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttctttgtcctacgaggaagatgaattcttagaaatagttagattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 746
Length adjustment: 9
Effective length of query: 338
Effective length of database: 737
Effective search space:   249106
Effective search space used:   249106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)