BAC Information

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BAC

Clone NameMSMg01-328G05
Chromosome3 (Build37)
Map Location 76,241,030 - 76,241,420
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328G05.T7 (MSMg01no328_g05.b1)MSMg01-328G05.TJ (MSMg01no328_g05.g1)
ACCAG445498AG445499
length762763
length of high quality
(start - end)
378 (45 - 422)502 (71 - 572)
definitionCHROMAT_FILE: MSMg01no328_g05.b1 PHD_FILE: MSMg01no328_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:31 2005CHROMAT_FILE: MSMg01no328_g05.g1 PHD_FILE: MSMg01no328_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTTTAGAACCTGGCTGAACAGAATTGTCCACACATGTAAAAGATTTC
TCAGAAAATTTATTCTTTCTACATTGGTGTAAAGAGCATGGGTCTACAAA
AGCCAAAAAAAAAAAACCCAATGATTTTTCAGAAATAATATAAACAGCTG
ATATATATATATATATATATATATGAGAAATTATTATCATAAAGACCATA
AGAGAGGCAATTTTGATCTAACGTATGGTTTTAAAGTGAATAGGCTTGTT
GGGCTCTCTCTGTTTTAAAATGGTCCCATCCTGCATCTTGCCCTATAGTT
TTGCATTTTAAAATGATTCATAAAATCTGTTTTAGATGTTCTACCTTTGC
AGATTTATCTATTCTCTAACGCCCCACATCTTCCACTTGCTAGTCTCTCA
TTAATAAGATTTATCTATTTGTGCAAATTCCATTAAGCATTAAAAGCAGA
TACAATCAGACCCATCACTTCCTCCTTTATTTAAAGTGAGTATTCATATT
TAATTCTTACCAATTTGGATCCTCATGTTGTACAAATATTGACAAAAAAA
GGCACTGTCTGACTTGAATTAAAATTGAAGTAAAAAATGATGTGTGAATT
GCTCAGTCATTCCTAATATACACACTGTTATGTATCCTGTCAGTCATAAT
AAAAAATTGAACTAAAATTACTTCTTACCAATTGCAGTGTAATATTCTTG
GCTGTGCATCCN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCACACCACCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTATAAAGAATGAATTTATG
AAATTCCTATGCAAATGGATGGACCTGGAGGGTATCATTCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATATGTGGA
TATTAGCCCTTAACCTAGGATACCCTAGATATTGGAAACAATTTCCCTAA
CACATGAAATCTCAGTAACAATGAAGACTTGAAATGTGGACACTATGCCC
CTCCCTTATAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_g05.b1 MSMg01no328_g05.b1 CHROMAT_FILE:
MSMg01no328_g05.b1 PHD_FILE: MSMg01no328_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:31 2005
         (378 letters)



>mm_chr3_76240846_76241623
          Length = 778

 Score =  617 bits (319), Expect = 0.0
 Identities = 364/391 (93%), Gaps = 20/391 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttagaacctggctgaacagaattgtccacacatgtaaaagatttctcagaaaa 64
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaattctttagaaactggatgaacagaattgtccacacatgtaaaagatttctcagaaaa 244

                                                                       
Query: 65  tttattctttctacattggtgtaaagagcatgggtctacaaaagccaaaaaaaaaaaa-- 122
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  
Sbjct: 245 tttattctttctacattggtgtaaagaccatgggtctacaaaagccaaaaaaaaaaaaaa 304

                                                                       
Query: 123 ----cccaatgatttttcagaaataatataaacagctgatatatatatatatatatatat 178
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaaacccaatgatttttcagaaataatataaacagctgatatatatatatatatatatat 364

                                                                       
Query: 179 at--------------gagaaattattatcataaagaccataagagaggcaattttgatc 224
           ||              ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 365 atatatatatatatatgagaaattattattataaagaccataagagaggcaattttgatc 424

                                                                       
Query: 225 taacgtatggttttaaagtgaataggcttgttgggctctctctgttttaaaatggtccca 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 taacgtatggttttaaagtgaataggcttgttgggctctctctgttttaaaatggtccca 484

                                                                       
Query: 285 tcctgcatcttgccctatagttttgcattttaaaatgattcataaaatctgttttagatg 344
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tcctgcagcttgccctatagttttgcattttaaaatgattcataaaatctgttttagatg 544

                                          
Query: 345 ttctacctttgcagatttatctattctctaa 375
           |||  ||||||||||||||||||||||||||
Sbjct: 545 ttccgcctttgcagatttatctattctctaa 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)