BAC Information

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BAC

Clone NameMSMg01-328G21
Chromosome3 (Build37)
Map Location 92,265,535 - 92,265,880
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3
Downstream geneLOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328G21.T7 (MSMg01no328_g21.b1)MSMg01-328G21.TJ (MSMg01no328_g21.g1)
ACCAG445529AG445530
length733733
length of high quality
(start - end)
377 (52 - 428)650 (84 - 733)
definitionCHROMAT_FILE: MSMg01no328_g21.b1 PHD_FILE: MSMg01no328_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:35 2005CHROMAT_FILE: MSMg01no328_g21.g1 PHD_FILE: MSMg01no328_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAA
TCCGCGGAATTCCTGGTTCATATCCACAGATATTGTTTTTGTACTCTTTG
CTTTTGAGTTCTATATATATTCTGGATATTAATCCTATGTCAGATGTATA
TAGATGACAAGGATTCTATCCAAACCTGTGGGCTTCCTCCTCACCTGGTT
GACTGTTTCTGTAGCTGTGCAGAAGCTTTTTAGTTGTTGACCTTAGTTTG
GGAGAAATGAACTCTGATTCAGAAAGGCCTTTCCTACACCTGCATCCTGT
GAAGCACTTCTTATGTAATCTTCCAGAGGTTACAGGGTTTCAGCTTTCAG
CATTTAGGTCTGTGATCCAGTCAGAGTTAGTTTTCTGTGAGGTGACAGAT
GTGGATGTAGTTTCACTCATCTACATGCCCCACACATCCAGCTTTCCAAG
CACCATATGTTGAAGATGCTAATTTTCCTCCAGTGTTTTTATACTTATGA
TATATTTATTCCTAAGATATGTAGCAAATTTCACACAGAGTGTAAATGCT
TAAGGCTGACAGAGTTTGGTCCATGAGAAATAGAGAGATTTACAGTGTTA
AATATTGGCTTTAGTATCTGTTAGTCATGTACAGATTAAATTTCATGGTC
TATAATCTTTCTTTTCACGGTTAGTGATGTTGTTCTCATGGGAGGCTGAG
GTTGATACAAGAAAATGTATAAGGATTTTTCCA
AAAAAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAATATAAGATACAA
AATCAAAATAATATTTCGGCATACGCATAGCACAGTTTCCATAAAAAGAA
ACTGTAAGAACAAATTCCACTTACAGTATCTACAATAAAATATCTATCAA
TAAACTTAATAACAAGATTATAAATGTTTTGTTATAGAATATTTGATTAC
ATTGTGAACCCCAAGATTGTGTTATTTACTAAAATATGTCTTTCTAATTG
TGGGGTGGCTCAGCCCTGTTAACATGCACCTTTAATTCCTCTGGCTGGAA
TATAGACACATCTTTATTACATACCTTTAGTCCCAAACAATGAAGGTAAA
GTTAGTTTGTAGAAGAAAGTAGCCATGTTTGAACGCAATGTCTAATTGAG
TGGCAGACAAAGTGAAGAATTAGAGAAAGATTTGACAGAATAGGATATGC
CCAAGTCTCATGAGAAGAGAAAGAAAAGCTATTTAAGAGAGCACAGAGAG
TGAAAGAAAGGGAGGCAATTTATCATAACAGTTATATAGAAAGAACAAAC
TAGGTACAAGTGAAGATGTAACAAGCCAGAAGAGTAGAATATGTTGCCAA
ATTTATTATGTGGCCAAGTGGAGTAATTCAGAAGAATCCATATTGAATGA
CTCAGCTTGGAGAAGAGTTTTTATCTAGAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_g21.g1 MSMg01no328_g21.g1 CHROMAT_FILE:
MSMg01no328_g21.g1 PHD_FILE: MSMg01no328_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:35 2005
         (650 letters)



>mm_chr3_92265535_92266584
          Length = 1050

 Score =  630 bits (326), Expect = 0.0
 Identities = 341/346 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaatataagatacaaaatcaaaataatatttcggcatacgcatagcacagtttccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agtaatataagatacaaaatcaaaataatatttcggcatacgcatagcacagtttccata 287

                                                                       
Query: 61  aaaagaaactgtaagaacaaattccacttacagtatctacaataaaatatctatcaataa 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 286 aaaagaaactgtaagaacaaattccacttacaatatctacaataaaatatctatcaataa 227

                                                                       
Query: 121 acttaataacaagattataaatgttttgttatagaatatttgattacattgtgaacccca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 226 acttaataacaagattataaatgttttgttatagaatatttgattacattgtgaactcca 167

                                                                       
Query: 181 agattgtgttatttactaaaatatgtctttctaattgtggggtggctcagccctgttaac 240
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 166 agattgtgttatttactaaaatatgtgtttctagttgtggggtggctcagccctgttaac 107

                                                                       
Query: 241 atgcacctttaattcctctggctggaatatagacacatctttattacatacctttagtcc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atgcacatttaattcctctggctggaatatagacacatctttattacatacctttagtcc 47

                                                         
Query: 301 caaacaatgaaggtaaagttagtttgtagaagaaagtagccatgtt 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  caaacaatgaaggtaaagttagtttgtagaagaaagtagccatgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)