BAC Information

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BAC

Clone NameMSMg01-328H09
Chromosome3 (Build37)
Map Location 100,252,512 - 100,252,778
singlet/doubletsinglet
Overlap genenone
Upstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2, LOC195514
Downstream gene4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328H09.T7 (MSMg01no328_h09.b1)MSMg01-328H09.TJ (MSMg01no328_h09.g1)
ACCAG445552AG445553
length733761
length of high quality
(start - end)
271 (42 - 312)267 (71 - 337)
definitionCHROMAT_FILE: MSMg01no328_h09.b1 PHD_FILE: MSMg01no328_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:37 2005CHROMAT_FILE: MSMg01no328_h09.g1 PHD_FILE: MSMg01no328_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCATTATCCCAATCAAGTGTGAAAACCATATGGTCACTTCAATATAGC
AAAAATATTTGATAAAACGCAATATCCCCTTAGCTTTGCTTCCAGTAAAT
TTGGGCAGAATGAAGATATTTCAGCACAATAAAGGATATACATGACAACC
CATAACTAATACCATATTGAATGGGTACAGTTTTAAAATTCTTTCTCTGT
GAGTTGGAACAAGACAAGGATGCCTGCTTTCATCACTTTCATACAGCACT
GGACGTCCCAACCAGAGAAATTAGGCAAGATAAAGAACGAACATCCAAAT
TGGAAGGGGAAAAGTCAACTTTCTTTGTTATCAGATGTCATGATTGTGTC
TACAGAAATCCCCCCCCCACCTACCAAAAGAAAAAGAAAACTGTTGGAAC
TAATGAACAAATTCAATATATTCATAGAATACAGAATCAATAGTACTTTT
ATATGCTAACAATGCATTATCTAAAAAAGAAATCAATAGAAAATTCTATT
AATACTAGCTATTAAATTATTATATAACACCTGGAAGTAAATTAATGACA
GATACTACAGTGAACATTAGCTAACTAAATAATACTGTGCTTTAGCGACC
CCCGCATATAATCCCTGTTCTTGCTAGACTGAGGCTGTGAATCGCTATGG
AGTTCCAGGCCTTTTCTGAGCTAAATGCTATTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATAGTGGCTAGCCAGGCCTGTCATATTCTG
TGGACAATAGAGTTGGGATAAGGAGACTATCCAGTGACCTCTTTATTCTC
TCTGGCGTTCTAGGGAACCTGGTGAAAACCCAGCCCTGCCTTCCCCCGAG
GAGGATGCACAGGCACAACATGCATGTGCATTTGTACCCTCTGGGGCTGT
TCAACTCTTCTCAGGCATTCAGAGTCCCTTCACAGCATAAAGGATTTTGT
ACCTGCTCTGTGGATTCCTCACCACTAGCCCTCTTAGTAGAGGTGGGGGC
GGGGTAAGAAAGCAGACTCATTCATGTCTCTGCCTTTGGGAAGGTCCAAG
CCTTCTCAACACCCCGCTGCTTTGGGTTATCTATTTCGATTATGCCTTAT
CCTAAGCCGCTGAATCTGTGGCTTTTGCTCAAGTTATGGTTGAGCTTGGG
TCCTGGGTCTTCTCCTCAACTCCCAAAGCTTCATTTAAGCCTCTTCCACA
AACCGGTCTATAGTGTATTCGGTATTATCTTTAAAGACAGTACTTGATGG
ATAAGCTTACTGTATTAGTCTTGTCCGCCTTTGTTCAACTTGGTCCCGAA
TAACTCCCTGTTTGGCCTTTGAAATCCCTTCTATTCTTTCTATTCTCTCC
TTTCTTTTTCCCCTAACTACTATTCCTTTCCCCCTATTATATAAATTGTT
CCAACTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_h09.g1 MSMg01no328_h09.g1 CHROMAT_FILE:
MSMg01no328_h09.g1 PHD_FILE: MSMg01no328_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:37 2005
         (267 letters)



>mm_chr3_100252312_100252978
          Length = 667

 Score =  478 bits (247), Expect = e-139
 Identities = 262/267 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtggctagccaggcctgtcatattctgtggacaatagagttgggataaggagactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atagtggctagccaggcctgtcatattctgtggacaatagagttgggataaggagactat 408

                                                                       
Query: 61  ccagtgacctctttattctctctggcgttctagggaacctggtgaaaacccagccctgcc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 407 ccagtgacctctttattctctctggcattctagggaacctggtgaaaacccagccctgcc 348

                                                                       
Query: 121 ttcccccgaggaggatgcacaggcacaacatgcatgtgcatttgtaccctctggggctgt 180
            |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 347 ctcccccaaggaggatgcacaggcacaacacgcatgtgcatttgtaccctctggggctgt 288

                                                                       
Query: 181 tcaactcttctcaggcattcagagtcccttcacagcataaaggattttgtacctgctctg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 287 tcaactcttctcaggcattcagagtaccttcacagcataaaggattttgtacctgctctg 228

                                      
Query: 241 tggattcctcaccactagccctcttag 267
           |||||||||||||||||||||||||||
Sbjct: 227 tggattcctcaccactagccctcttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)