BAC Information

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BAC

Clone NameMSMg01-328K17
Chromosome3 (Build37)
Map Location 41,029,222 - 41,029,565
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328K17.T7 (MSMg01no328_k17.b1)MSMg01-328K17.TJ (MSMg01no328_k17.g1)
ACCAG445709AG445710
length754772
length of high quality
(start - end)
344 (75 - 418)249 (79 - 327)
definitionCHROMAT_FILE: MSMg01no328_k17.b1 PHD_FILE: MSMg01no328_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:53 2005CHROMAT_FILE: MSMg01no328_k17.g1 PHD_FILE: MSMg01no328_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGACTCCGC
GGAATTCTTTGAATATTCCGAGAACTATGTTTTGACCTCCCAGGTCCACC
TCTGCCTCCATACCTCCCAGCTTTGTGTCCTTTTTAAAAGATTCAATAGG
CCATTGACTCCAGTGTGTGCTGTCCATACATTTCTGGGTTTTAAGAGTCT
AGGACCCAATCATATCTGCCTCAGAGATGAAGATCACTGGTTAAGAATGG
TTCACTCTGAGAACCAAACCCGACAGTTTCCTTCAGTCCAACTTACAGCT
TAATCTTTGTGTGCCGATTATACAGGATTGTTGACTTGTAATTTGAGTTA
GATCCACATGAGACACACATCAGGTCCCTGACATGGGTGTTAGCAAGGCT
TGTCAGCCCACTGCTCTACACCCCACCCACAAAATTTACAAAAATGCCCA
CGTTTGCTGAATGGGATGTGCCTTATCCACTGCTTCTCACTTGGAACTAA
ATAGACAGGCTTGTTCTTAATAGTCAGTCCTCCTTATCCACAACTTCTCC
ATCTGAGGGATCAACTAGGTGGAGGAGTAGGAAGAGGATGATGACTTATC
TTTTTTCATTCTCCACATTACAATTTTATTTTTTCTCCATTCTTTCCTAT
CTTCGTCATCACTAATCTTTATTTTTTCTTTATTTTATACTTCTTACTCT
TCTACCTTCTAATAGTATTCTATTCTTCATTATTAATATTTTATATCTTT
TTTA
NNCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTCAATAGTTCATATCATC
AACTTGACAGATTCTGAAACCCCCTAGGAGACATTTGGGTATGCCTCAAG
GATTATCTAGATTGGGTTAATTGGGGAGGGAAGCCTCACCGTAATTGGGA
GTGGCACACTTCTGTGGACCACAGTCCTGGATACACAGAAAGGGAGAGCC
GGAGCAGCAGGCATTGCTCTTGCTTCCCAGCTGCAGAGCCGTGTACCCAG
CCGCTTCAAGGTCAGGACCAGGACTTCCCTGCTGCGAAGGACTGGGCTCT
TGAATTGTGAGCCCAAATAAACCCCATCTCCCTAAGTTGTTTGTGTCAGA
ATATTCTTTTAATATCTTTTTTTTAACAATTGTTGCAATGACAGNGGGTA
TACCCTGAATAATACCACTATATTATATATATATATGTACATATATATAT
ATTTATATACGTATCTCTTCCTTTTTTCTCTCGTCTGCTCCCCTTCCCTA
CCTATTTTTCTTTTATATCCTATTTTACACCTCTTCTTTTCTTCTTATTA
TCCCATCCATTTCTTTTCCGTCTCTTTTTCTCTCTTTTTCTCTTTATCCC
CTTATATTCTCTTTCTCCTCTTTTTCTTCTCTTCGTTCCTCCTCGTTCTT
TTCTCGCCTATTCTCTTTTTTCTTTTTTTTTTTTCTCAATTTTCTATATT
GCTCTTTATGGTTTTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_k17.b1 MSMg01no328_k17.b1 CHROMAT_FILE:
MSMg01no328_k17.b1 PHD_FILE: MSMg01no328_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:53 2005
         (344 letters)



>mm_chr3_41029022_41029765
          Length = 744

 Score =  642 bits (332), Expect = 0.0
 Identities = 341/344 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgttttgacctcccaggtccacctctgcctccatacctcccagctttgtgtcctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgttttgacctcccaggtccacctctgcctccatacctcccagctttgtgtcctttt 260

                                                                       
Query: 61  taaaagattcaataggccattgactccagtgtgtgctgtccatacatttctgggttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaagattcaataggccattgactccagtgtgtgctgtccatacatttctgggttttaa 320

                                                                       
Query: 121 gagtctaggacccaatcatatctgcctcagagatgaagatcactggttaagaatggttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtctaggacccaatcatatctgcctcagagatgaagatcactggttaagaatggttca 380

                                                                       
Query: 181 ctctgagaaccaaacccgacagtttccttcagtccaacttacagcttaatctttgtgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgagaaccaaacccgacagtttccttcagtccaacttacagcttaatctttgtgtgc 440

                                                                       
Query: 241 cgattatacaggattgttgacttgtaatttgagttagatccacatgagacacacatcagg 300
           |||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cgattatacaggaaagttgacttgtaatttgagttagagccacatgagacacacatcagg 500

                                                       
Query: 301 tccctgacatgggtgttagcaaggcttgtcagcccactgctcta 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccctgacatgggtgttagcaaggcttgtcagcccactgctcta 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)