BAC Information

Click to search

BAC

Clone NameMSMg01-328L02
Chromosome3 (Build37)
Map Location 87,798,909 - 87,799,286
singlet/doubletsinglet
Overlap geneBcan
Upstream geneCd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes
Downstream geneHapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328L02.T7 (MSMg01no328_l02.b1)MSMg01-328L02.TJ (MSMg01no328_l02.g1)
ACCAG445725AG445726
length757748
length of high quality
(start - end)		470 (46 - 515)378 (84 - 461)
definitionCHROMAT_FILE: MSMg01no328_l02.b1 PHD_FILE: MSMg01no328_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:55 2005CHROMAT_FILE: MSMg01no328_l02.g1 PHD_FILE: MSMg01no328_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGAAACAATGAAGCTGATGATTGCTCTTGCCATCACTGGATCC
ATGGGCAAAGGAAAACAATGATAAAGTGGACCAGCTCTAGAGTCACATAT
ACACTATAAAGGTTTCTAACTGTGCCCTGGAAGAGAATTATCCCTTTATC
AGCCACAGAGCTCAAGTTACAGAAAATCAAATAGAAGCCCTGATTTTAAG
AGTAGCTGAATTATAATGAGAATCTCTGTCACGGTGGTGGATGGTGTTGG
CAGTTAGGGTAAGGGCACTGACTAACAAACACTGGCACCCTGTAACTTGG
GGTGGAAGTGTGTGTGGGTGTCCCAACGAGGCTGAGGATTCTGAACACTT
GAATTCTAGAGAAGTCTCTCTACCCTTAGCAGAAGATGCACCTCCAATTC
CTACCTTCTGCAGTACAGCCTTCTTCACCTTTGCCTGGGAAATTAATTCT
TCATTGACTGCTGAACCAAAGGTAACTTTCCCTGAAGAAGATGCCAGGCA
AGACAACACTGGCGTCCCTCATATACCAACCATTAATTGCCTCTAGACCT
ATAACCTGACTCTTGGTTTTTAAACAAGCTTCCTGTAATTATAAGTTGAA
AAGCGGTAAACCTTGACGCAATTGTATCCCTTGTAATTGGATATTTTCTC
GTTTTCCTTGGGTATGATTCTTTTGTCTGTCCCAATGAACGCTCTTTGCT
TTGACAT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCACCATCTTCTTGG
TCATTTGCCCTCAGTAATCTGTATTAGCTTCCTCAATCCTTGTGCCTGTC
AGCATATTGGCCAACAGAGGTAGCTGACATTTTTTTCACTTCCATGAACC
AACTGTTCTGTGCTTCAGTGAACAAAATGCACGTGGGAGTGGAACGCTCC
TTAGAATGTTCCAGATCCTACAGCTTATGGGTGACAGGGCTTTCAACACT
GAGTGTTGAGGAGGGGACAGAGGGTGGTACTAGGAAGCCAGATGAGTGCA
GACTCTGAGCCAAGCACTTTGTTCTGAAAGAAGCAGTAAGAGGCATGACT
GTGGAGGGACAAGGAGGGGAGATGAAGGACAGATGTAGGTTTGCTGGTCT
GTGGTGACCTGGAGCAAGGGTCACTGGAACAGGTCATACAGTCCTGTCTG
ACCTGCCTAGAGATAGCTCTCTGAGCTTCTCTTGGCCCCACTCTACGTTG
GAGTCACTGGTTCTCTGCTCAGTGTTCCCTCCCCTCAAGATGAGGTAATT
CTCCTTGGACCCCCTGAACTTCATCCCCCTAAAGTGTTTTCCTCCCTTTT
TCCTTAATCTTCTACTGCACTCCCAAGCTTCACCTAATATTGGACCTTCT
TTTTCCTCTTTTCCCGGCGTATGGATTTTTCCCACTTTCCATCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_l02.g1 MSMg01no328_l02.g1 CHROMAT_FILE:
MSMg01no328_l02.g1 PHD_FILE: MSMg01no328_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:55 2005
         (378 letters)



>mm_chr3_87798709_87799486
          Length = 778

 Score =  716 bits (370), Expect = 0.0
 Identities = 376/378 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcaccatcttcttggtcatttgccctcagtaatctgtattagcttcctcaatccttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cctcaccatcttcttggtcatttgccctcagtaatctgtattagcttcctcaatccttgt 519

                                                                       
Query: 61  gcctgtcagcatattggccaacagaggtagctgacatttttttcacttccatgaaccaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gcctgtcagcatattggccaacagaggtagctgacatttttttcacttccatgaaccaac 459

                                                                       
Query: 121 tgttctgtgcttcagtgaacaaaatgcacgtgggagtggaacgctccttagaatgttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgttctgtgcttcagtgaacaaaatgcacgtgggagtggaacgctccttagaatgttcca 399

                                                                       
Query: 181 gatcctacagcttatgggtgacagggctttcaacactgagtgttgaggaggggacagagg 240
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 398 gatcctacagcttatgggtgacaggactttcaacactgcgtgttgaggaggggacagagg 339

                                                                       
Query: 241 gtggtactaggaagccagatgagtgcagactctgagccaagcactttgttctgaaagaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtggtactaggaagccagatgagtgcagactctgagccaagcactttgttctgaaagaag 279

                                                                       
Query: 301 cagtaagaggcatgactgtggagggacaaggaggggagatgaaggacagatgtaggtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cagtaagaggcatgactgtggagggacaaggaggggagatgaaggacagatgtaggtttg 219

                             
Query: 361 ctggtctgtggtgacctg 378
           ||||||||||||||||||
Sbjct: 218 ctggtctgtggtgacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |