BAC Information

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BAC

Clone NameMSMg01-328N18
Chromosome3 (Build37)
Map Location 50,107,986 - 50,298,980
singlet/doubletdoublet
Overlap geneLOC639469, Slc7a11
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628
Downstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328N18.T7 (MSMg01no328_n18.b1)MSMg01-328N18.TJ (MSMg01no328_n18.g1)
ACCAG445846AG445847
length738741
length of high quality
(start - end)		376 (47 - 422)341 (78 - 418)
definitionCHROMAT_FILE: MSMg01no328_n18.b1 PHD_FILE: MSMg01no328_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:07 2005CHROMAT_FILE: MSMg01no328_n18.g1 PHD_FILE: MSMg01no328_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,298,617 - 50,298,980)(50,107,986 - 50,108,325)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGGCAGTTCCTCTAAGAGCAATTCAGTGAGAAGCTGAGAGAG
GCCAGACTGATTCAGTCATCTTGGAGAAGAGTTTGAGCCAGAACAGCTGA
GTTGAACCAGTCCACCAAAGTTCATCAAGAGCTAGAAAGAATAAGCTCAT
TCAGGAGGAAGCCTCTGCCCAGACGACAAGTACATCAGGCAAATAAAATA
CGTTTACACCTGGAGCTAAAATAAGCCACAGCTCCTGCCTATAGAGTGCT
TACAGAGTACTAGAAAAACAAAGAACTATAGTGTGTTAGAGTGTCAGTAA
GGACAGCTCAGCTCAGCAATGCTTGAACATTTGCCGACTCACAAAACTGT
TTATACAAAATCGAAACAAAACACCCACACAAACAAACAAAAAGTTACAA
TAATGTGTACTTAAATTGGGGTTAATATGTTGCTATTTATCACTCATAAA
AAATCATCACTCAAAAACAGTTTAAAAGAATTTAAAAATGTATACATTAC
ACTTTCAGTTTCTATTTTTTATTGCAATGATAGTTACTCTTTTCTTAGAC
AAGATTAAAAAGATGTGTTTTAGACCTTTCTTAGCATGCCTTAGAGTGAT
TCATAATAGTTATTTACAGTTTCAGTTATAAACAATTAGGTTCCCCACCT
TCTGGAGTTCCTTGTAGATGCAGGTGAGCCCAGAATTT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTATGGGTTGGAACTCACAT
CTGAAAATTGACTGTGAGTGCTCAGCCCTCTGTTATAGTGACCTGGGTAA
GACCTATGCTTCCCACGCGTGAAGCATTTTCTATAATGCACTTCAGAAAG
GACTATTTACTCTTGCCTCTTTCAGTGAAGGAACTGATGGTGACCAAAAT
ATATTCCTGCATTTCAGAGCTTAAGGAAGAAGGGCTTGGCCTGCTGCTGG
TTCTGATGGGCATAGCAATTATATTGCTTGCCTGTAGGTGGCACCAGTTG
GCTGCTACTACCCTGGAATGGTCCATCCTCAAGGCCATCACAGAACGTCA
ACAGAAGCATCTACCACTTTTCCCCCCCCCACCAGCTCAAGTCTTGTTCA
AAACTGTGCCTCTCTTGACTAATGCGTTTCCCAGGACCTTGATTAAAGAC
ATCCTCCAGCCCTCTTGGGACCATGTAAAGGGAGGACAGTTTGAATGTTA
TTTTACCTCAGAAGATGTCCTTCTCTAATAAACTGCATATTTTGTATCAC
ACCTAGCATCTCCAGCTTTCTTATCCCAAGCCCCGATTGATCCTAGTCTC
TACCCCAGAACTAACCCCTCATGCAATGACTCCCTTCCAACCACCCTGTG
TCAAAACCTCCCCTTGTGAAATTCCCAGAATTACAACGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_n18.b1 MSMg01no328_n18.b1 CHROMAT_FILE:
MSMg01no328_n18.b1 PHD_FILE: MSMg01no328_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:07 2005
         (376 letters)



>mm_chr3_50298205_50298980
          Length = 776

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  gtggcagttcctctaagagcaattcagtgagaagctgagagaggccagactgattcagtc 71
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 gtggcagtttttctaagagcaattcagtgagaagctgagagaggccagactgattcagtc 717

                                                                       
Query: 72  atcttggagaagagtttgagccagaacagctgagttgaaccagtccaccaaagttcatca 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 atcttggagaagagtttgagccagaacagctgagttgaaccagtccaccaaagttcatca 657

                                                                       
Query: 132 agagctagaaagaataagctcattcaggaggaagcctctgcccagacgacaagtacatca 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agagctagaaagaataagctcattcaggaggaagcctctgcccagacgacaagtacatca 597

                                                                       
Query: 192 ggcaaataaaatacgtttacacctggagctaaaataagccacagctcctgcctatagagt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggcaaataaaatacgtttacacctggagctaaaataagccacagctcctgcctatagagt 537

                                                                       
Query: 252 gcttacagagtactagaaaaacaaagaactatagtgtgttagagtgtcagtaaggacagc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gcttacagagtactagaaaaacaaagaactatagtgtgttagagtgtcagtaaggacagc 477

                                                                       
Query: 312 tcagctcagcaatgcttgaacatttgccgactcacaaaactgtttatacaaaatcgaaac 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tcagctcagcaatgcttgaacatttgccgactcacaaaactgtttatacaaaatcgaaac 417

               
Query: 372 aaaa 375
           ||||
Sbjct: 416 aaaa 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no328_n18.g1 MSMg01no328_n18.g1 CHROMAT_FILE:
MSMg01no328_n18.g1 PHD_FILE: MSMg01no328_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:07 2005
         (341 letters)



>mm_chr3_50107786_50108526
          Length = 741

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttatgggttggaactcacatctgaaaattgactgtgagtgctcagccctctgttata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttatgggttggaactcacatctgaaaattgactgtgagtgctcagccctctgttata 260

                                                                       
Query: 61  gtgacctgggtaagacctatgcttcccacgcgtgaagcattttctataatgcacttcaga 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgacctaggtaagacctatgcttcccacgcgtgaagcattttctataatgcacttcaga 320

                                                                       
Query: 121 aaggactatttactcttgcctctttcagtgaaggaactgatggtgaccaaaatatattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggactatttactcttgcctctttcagtgaaggaactgatggtgaccaaaatatattcc 380

                                                                       
Query: 181 tgcatttcagagcttaaggaagaagggcttggcctgctgctggttctgatgggcatagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatttcagagcttaaggaagaagggcttggcctgctgctggttctgatgggcatagca 440

                                                                       
Query: 241 attatattgcttgcctgtaggtggcaccagttggctgctactaccctggaatggtccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatattgcttgcctgtaggtggcaccagttggctgctactaccctggaatggtccatc 500

                                                   
Query: 301 ctcaaggccatcacagaacgtcaacagaagcatctaccac 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaaggccatcacagaacgtcaacagaagcatctaccac 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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