BAC Information

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BAC

Clone NameMSMg01-328P09
Chromosome3 (Build37)
Map Location 144,333,027 - 144,333,573
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621809, LOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761
Downstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328P09.T7 (MSMg01no328_p09.b1)MSMg01-328P09.TJ (MSMg01no328_p09.g1)
ACCAG445918AG445919
length781735
length of high quality
(start - end)
179 (36 - 214)547 (69 - 615)
definitionCHROMAT_FILE: MSMg01no328_p09.b1 PHD_FILE: MSMg01no328_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:15 2005CHROMAT_FILE: MSMg01no328_p09.g1 PHD_FILE: MSMg01no328_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCTATACGACTCCTATTTCGCACGGATCCGCGGAATTCTCA
CATTTATCAGATTTTGTTGTGCAAACCTTGTTCCTTGATCTAAAATTATT
GGTTAAATAAAGTTGGCTATAGCCAATTACTGGAGGGATTTGAAGGTAGG
TGGGTTTTGAGTTACCTGGCTGGGAGTGGAGAAGCCAGAGGAGTGAGGAG
AGACCAGGAGGAGGAGGCAGAATGAGAGGAGAGTAGGAAGCCGTCATGAC
GGGAGATGATCATGATTTCGTGGCCTGTACATCCAGCTCGTTATCTGGCG
TACAGCGCTGGTTTTTTTGCCTGGCCAGCACCTATAACACCCGATTATGG
GTTTTCCCCTCTCCCTACCCCTTGTTATTAGCCTCTGACATCTCATTATT
TTGATTCCCCCCCCACCCTCACACTAGTCTATTATTACCCCTTCTTGCTT
CGTATCTTATCTTCTCTCTCATATACGTAACTATTTTCCTGTGCCCGTTG
TTTCCGCTTCATGTTTCTATTTCTCTTTTTCTTTTATTCCCCTATCGCCT
GATTTCTCCTTTCCTTCTATCTCCTCTCTAGCAATCCGTCCTCCTCTCTT
TTGTCTAAACCCCATCTCTTTTCGTCGTATTTTCTTCTTCCCTGTCCTCT
CTACCGTGACTTCGATTGCACACTTTCTACCTTTTCATCCCCTTTATCGT
TCCTTCTACATTCCCTCCCTACACTCCCCCCCCCCCTTTACTTTCCGACT
CCCTTCTTTCTTCTCCATCTTTCTTTTTCCG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTACTCCTCTCAGTAGCCTGTTTTGACTCCCA
ACCCATGCTTTTTTGCCTCCACTAAATACTCCAGGGATGGAAACAGTTAA
GAGCCCAAAGCTCCTGCTTCTAGTGGTGAGCCCTTAGGAGGGCTGCCCAG
TCAACCCTGGAAGGTGGGTCGTGGGACCTAACAGCTCTGTAAGCAGATCC
GGCCTTTTAAAGGTCTCATGAAAGCAGATGCACACCGTTGAGGCTGCAGT
CTGGGTGCTGTCTGGTACTGATAAGGCTGCCTGGGAACGCCCCGTCCTAT
CCCTACCTCGATCCAAAGGCTCTTTGAGAGGCGGCCAAGCATGTGAGTCC
AGCCAAGCAGCCCTAAGTGCATTATCTTGTCTAAGCAAAGCATGAGAAGT
AAATTAAGATGCTCGCTGACATCACTGACTTAACAGTTAAAAAAGAAGAA
GAAAACAAGCAAACCCCCCCCCTGCTTTTACCTAATGCATGACCACTGCC
CTAAAGAAAAAACTCTCCCTTCCCTTANAGTTGTATTTAACTTAAGAGGA
AAAAAAAAAACCTGGGTGCTTCTGCCATCTCATTCTGTAAAGAGCCTTTT
AGGTCATCTTCTCTGGTCACTTCTGAACCATTCACTATACAGGGATTGGC
ATTACCTTAATTAACTTAAAACCACTAGATCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_p09.g1 MSMg01no328_p09.g1 CHROMAT_FILE:
MSMg01no328_p09.g1 PHD_FILE: MSMg01no328_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:15 2005
         (547 letters)



>mm_chr3_144332827_144333773
          Length = 947

 Score = 1052 bits (544), Expect = 0.0
 Identities = 546/547 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctactcctctcagtagcctgttttgactcccaacccatgcttttttgcctccactaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctactcctctcagtagcctgttttgactcccaacccatgcttttttgcctccactaaata 688

                                                                       
Query: 61  ctccagggatggaaacagttaagagcccaaagctcctgcttctagtggtgagcccttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctccagggatggaaacagttaagagcccaaagctcctgcttctagtggtgagcccttagg 628

                                                                       
Query: 121 agggctgcccagtcaaccctggaaggtgggtcgtgggacctaacagctctgtaagcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agggctgcccagtcaaccctggaaggtgggtcgtgggacctaacagctctgtaagcagat 568

                                                                       
Query: 181 ccggccttttaaaggtctcatgaaagcagatgcacaccgttgaggctgcagtctgggtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ccggccttttaaaggtctcatgaaagcagatgcacaccgttgaggctgcagtctgggtgc 508

                                                                       
Query: 241 tgtctggtactgataaggctgcctgggaacgccccgtcctatccctacctcgatccaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgtctggtactgataaggctgcctgggaacgccccgtcctatccctacctcgatccaaag 448

                                                                       
Query: 301 gctctttgagaggcggccaagcatgtgagtccagccaagcagccctaagtgcattatctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gctctttgagaggcggccaagcatgtgagtccagccaagcagccctaagtgcattatctt 388

                                                                       
Query: 361 gtctaagcaaagcatgagaagtaaattaagatgctcgctgacatcactgacttaacagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtctaagcaaagcatgagaagtaaattaagatgctcgctgacatcactgacttaacagtt 328

                                                                       
Query: 421 aaaaaagaagaagaaaacaagcaaaccccccccctgcttttacctaatgcatgaccactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaaaagaagaagaaaacaagcaaaccccccccctgcttttacctaatgcatgaccactg 268

                                                                       
Query: 481 ccctaaagaaaaaactctcccttcccttanagttgtatttaacttaagaggaaaaaaaaa 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 267 ccctaaagaaaaaactctcccttcccttaaagttgtatttaacttaagaggaaaaaaaaa 208

                  
Query: 541 aacctgg 547
           |||||||
Sbjct: 207 aacctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)