Query= MSMg01no329_o18.b1 MSMg01no329_o18.b1 CHROMAT_FILE:
MSMg01no329_o18.b1 PHD_FILE: MSMg01no329_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:32 2005
(562 letters)
>mm_chr3_83123774_83124732
Length = 959
Score = 961 bits (497), Expect = 0.0
Identities = 543/559 (97%), Gaps = 3/559 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagagcctcaacacttgaaacaaacataaacagccagagaatttctggaaaatg 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggaattcagagcctcaaaacttgaaacaaacataaacagccagagaatttctggaaaatg 569
Query: 64 agaaatacaaatcctacaaacaaagagaaaaaaaatgagaaacaaagagacaaagatgta 123
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 568 agaaatacaaatcctacaaacaaagag-aaaaaaatgagaaacaaagagacaaaaatgta 510
Query: 124 aaaacataaaatggggtgcaggagagaggctctgggcccagcacctctcaaattggagtt 183
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaaac--aaaatggggtgcaggagagaggctctgggcccagcacctctcaaattggagtt 452
Query: 184 ccacaaaaggtgcaggcaaggggcgtttggaaagtgcctgactttgtagagcagcaagaa 243
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 451 ccacaaaaggtgcaggcaagtggcatttggaaagtgcctgactttgtagagcagcaagaa 392
Query: 244 agggaagctagatagcaggccattttcccacgagagacatgagctgagttgagaattgca 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 391 agggaagctagatagcaggccattttcccatgagagacatgagctgagttgagaattgca 332
Query: 304 aacctagcaaaagcaaagagtgaatatccaggtgtagacaacccaaatctgaactgacta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aacctagcaaaagcaaagagtgaatatccaggtgtagacaacccaaatctgaactgacta 272
Query: 364 ggagaatatttcaacaaaaaggaaaacaatgcctggaatgtaatttaaaaacattgttca 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 271 ggagaatatttcaataaaaaggaaaacaatgcctggaatgtaatttaaaaacattgtcca 212
Query: 424 ggataatgcgttcccatacactgcaatatctgtgctcatgagactacaacaggagaataa 483
|||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 211 ggataatgtgttcccatacactgcaatatccgtgctcatgagactacagcaggagaataa 152
Query: 484 tgaatttaaggccagtctgagctacatagcaatattgtcagaaaagaaaaaggagagagg 543
||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 151 tgagtttaaagccagtctgagctacatagcaatagtgtcagaaaagaaaaaggagagagg 92
Query: 544 aaaagagaaaggtagggga 562
|||||||||||||||||||
Sbjct: 91 aaaagagaaaggtagggga 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 959
Length adjustment: 10
Effective length of query: 552
Effective length of database: 949
Effective search space: 523848
Effective search space used: 523848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_o18.g1 MSMg01no329_o18.g1 CHROMAT_FILE:
MSMg01no329_o18.g1 PHD_FILE: MSMg01no329_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:32 2005
(588 letters)
>mm_chr3_83023864_83024852
Length = 989
Score = 1073 bits (555), Expect = 0.0
Identities = 579/587 (98%), Gaps = 1/587 (0%)
Strand = Plus / Plus
Query: 1 acaccaataggtgttagttatggtttaatatgggaaaaaaa-tcagagctaacagacttg 59
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 acaccaataggtgttagttatggtttaatatgggaaaaaaaatcagagctaacagacttg 260
Query: 60 ctaggcaaatatgactacttggctctcaattttgtatgcttcagcccatggtggattggg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ctaggcaaatatgactacttggctctcaattttgtatgcttcagcccatggtggatttgg 320
Query: 120 aacattacttttggacatgtggcaaagatggtatgatgtgggagggtgacacatcgcctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacattacttttggacatgtggcaaagatggtatgatgtgggagggtgacacatcgcctc 380
Query: 180 agccaggaaacagagtaagagaagaagccaggatcccaatgtcctcctcaagagtgcgtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccaggaaacagagtaagagaagaagccaggatcccaatgtcctcctcaagagtgcgtt 440
Query: 240 tccaaggatctcacatccttctatgagcaacaaactcctaaagttccagcccctcccagc 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tccaaggatctcacatccttctatgagcaacaaactcctaaagttccaacccctcccagc 500
Query: 300 agtatgacagttcatcttaaatgtccaacatgcatgagcctttgaacaacccttatgcaa 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 agtatgacagttcatcttaaatgtccaacatgcatgagcctttgaagaacccttatgcaa 560
Query: 360 gctataacacaacctcacaaggtgtggaaatggaagatagaatgtttctctacataatgc 419
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 gctataacacaacctcacaaggtaaggaaatggaagatagaatgtttctctacataatgc 620
Query: 420 taacatgcaaagggcaccgagacagtgaaaataaactaaatcataactagtgtctttcat 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 621 taacatgcaaagggcaccgagacagtgaaaataaactaaatcataactagtgaccttcat 680
Query: 480 gaacagatacaagagtctgcatcacaatattaagaaattaacccaatgaaacaaaattga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaacagatacaagagtctgcatcacaatattaagaaattaacccaatgaaacaaaattga 740
Query: 540 aaccaactggagtcttaatacaatgtatgtaacctttaaggctaatg 586
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaccaactggagtcttaatacaatgtatgtaacctttaaggctaatg 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
