BAC Information

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BAC

Clone NameMSMg01-330F01
Chromosome3 (Build37)
Map Location 14,007,830 - 14,008,119
singlet/doubletsinglet
Overlap gene0710005M24Rik
Upstream geneLOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330F01.T7 (MSMg01no330_f01.b1)MSMg01-330F01.TJ (MSMg01no330_f01.g1)
ACCAG446907AG446908
length750757
length of high quality
(start - end)
320 (45 - 364)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no330_f01.b1 PHD_FILE: MSMg01no330_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:00 2005CHROMAT_FILE: MSMg01no330_f01.g1 PHD_FILE: MSMg01no330_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGATAAGGATAGCTTGAGTTTCTGTACCTCCTCAGAGCTGAGGTC
TCTCCCCTTCCTCAACCACTGGGACCTTTGTATGTAGTCTATATTTGAGC
ACATCACTACTTGGCTGACAGACACCATCAGGGAACGCCTACAGACTGCA
AACTGCTTGACATTGGACTTGCTGAAAGCTGATGAAAAACAGTCCAGCTG
ATGTAATTGCTCCCTGTTCTTTCATCTGGATCAAGAAAATCAGATACTGC
TGGGCAGTGGTGGGGCACACCTTTAATTTCAGCCCTTGGGAGGCAGAGGC
AGGTGGATTTCTGATTTCTAGGCCCGCCTGCCCTACAGAGTGAGTCCCAG
GACAGCCAGTGCTATACAGAGAAACTGTCTCAAAAAACCAAACCAAACCA
AACCAAACCAAACAAACAAACAAACAAAAACAAAAAACAAAAAAACAAAA
AAAAGAAAAGAAGAAAAGAAGAAAAAAAAAACCGGATACTATTGAAAAAT
GCCCCATTGCTCAGCTTTTGAAGAGCCTTTCAGCTTTCCTGGGTCCTGAA
AGTTTCAGCCCCAGTTTCAGCTGAAAGTAGTTACAGAAGGGAGTACTGTA
AGTGCCCCTTAACAGGCTGAAAATGGGAAGCAGAGGCAGGCAGATTTCTG
AGTTCAAGGCCAGCCTGGTCTACAGAGTGAATTGGGACTGCCCGGGTTAA

TCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGTATTGGATCTGATATTCTC
TCCCTCAACAAAAGCACACCATGGTAAACCAACGGTTCAAATTTATTTAA
TGGCCAAATATGAGAGAAACATTTAAGATATTTAACAACTATTGTATGTT
TTGTATATAGATAATATTAACCATATTTAAATGTGAGCATTTAAGTTATT
CAATCTTAGAAACTCTGATTTGTCTCACAGTGTTTTAAAATAAACATATA
TTGGGTGGTAACACTGTGATAAATTAATAAATTAATACTGCGTGTCCTCA
GGCTAATTCTCTTTGAATATTTTTATGCTTCCCTCCCGCTAATTCATTTC
AAAAAGTTACTTAGATGGTCCATCCTTTCGTCTCAACTCCAAACTCTGTC
TCTGTAGCTCCTTCCATGGGTGCCTTGCTCCCAATTCCAAGAAGGGGCAA
AGTATCCACACCTTGGTCTTCGTTCTTCCCGAGCTTCATGTGTTTAGCAA
ATTGCATCTTATATCTTGGGTATTCTAAGTTTCTGGGCTAATATCCACTT
ATCAGTGAGTACATATCATGTGAGTTCTTTTGTGATTGAGTTACCTCACT
CAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATT
CATTCTTTTTAATAGCTGAGTAGAACTCCATTGTGTAAATGTACCACATT
TTTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_f01.g1 MSMg01no330_f01.g1 CHROMAT_FILE:
MSMg01no330_f01.g1 PHD_FILE: MSMg01no330_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:00 2005
         (293 letters)



>mm_chr3_14007630_14008321
          Length = 692

 Score =  516 bits (267), Expect = e-151
 Identities = 285/291 (97%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgtattggatctgatattctctccctcaacaaaagcacaccatggtaaaccaacggt 60
           ||||||||||||||||||||||||||||||||||||||||||||| || |||  ||||||
Sbjct: 201 tgttgtattggatctgatattctctccctcaacaaaagcacacca-gggaaaagaacggt 259

                                                                       
Query: 61  tcaaatttatttaatggccaaatatgagagaaacatttaagatatttaacaactattgta 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcaaatttatttagtggccaaatatgagagaaacatttaagatatttaacaactattgta 319

                                                                       
Query: 121 tgttttgtatatagataatattaaccatatttaaatgtgagcatttaagttattcaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgttttgtatatagataatattaaccatatttaaatgtgagcatttaagttattcaatct 379

                                                                       
Query: 181 tagaaactctgatttgtctcacagtgttttaaaataaacatatattgggtggtaacactg 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taggaactctgatttgtctcacagtgttttaaaataaacatatattgggtggtaacactg 439

                                                              
Query: 241 tgataaattaataaattaatactgcgtgtcctcaggctaattctctttgaa 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgataaattaataaattaatactgcgtgtcctcaggctaattctctttgaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)