TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGCAGGTGCGCGG
AATTCCAGTATTTTTTCTNAAAAAAAGGGATACCAATATCTGGGTGTTTA
GAGCATAGGAAGACATTGTGTACACAATCACAATGACAAGATAATCCTAT
CACTTGCTTGCGCCAGTGTCAAGTTGAGCTATGAGAGAGCACAGGTTTGA
AAAGTTTGTTTTAGTGTAAGAAATTACATAGCGAAGAATGGTTTTTACTC
TTTTAATAAAAGTAATATAATAATAATCTATTTAAAGAAATTTTGTATAT
TTAGCAGGAAAAAGGAGAGTGTTGATATTTTACTATTAAGTATTTTATTG
GCAGTAACGACTTTTCTCTTTTCCCCCCCGCCTTTACTAATTTATTTTTA
TGCTTTATTTTCTTTCACAGAAGGACTAGATAAATAATTCAATTAGTGGT
GAAAGATTTCATCACAATTACAGGTTCATGAAATCATATACTTCTTCAGC
ATAAACTTAACGTGAGACTGCCACTAGCTCACACTCTTAACATGTGATCT
GTATGACTGTGTCAGAAATTTTATCTTTATTTAATAAAAAATATATATAA
ATACAATATTTCCAATTTTAAGTGACAGGAGATACTTGAGTGTTCCTTCC
CTTGTTTCTAGTGACTCTCTTTTTAACTTATGGGTTGTTTCTTTGGAAGA
GGTTCTTAGCAGACAGTTTTTATCTTGATATTTTTACAGCTTCTTAATTA
A

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGAATCTCAAAGGTAAGATC
ACCTTGCACAAATGTGAAAAGCTGGCTCAGACTGCACTGCCAGCTCTGTG
GATAGCAACACTCTAGTAAAACACCTGTCGTGAGAAAACAAGAGAAATAT
GAGAAATTCTTAGGGTATGGAGACATCGACTTGTTTAGGTACTCATTTCA
ACAAGAGTACTTCTTTAAAAAGACAGAGCCTCCATTTTCTCTCAAGCCCT
TCCATCGGAAACCTGCTGGCTGGCCACATTCGTTTGATTTCCTAAATTCA
GGGTTGGAACTTGGTTGTTTTAACTCACCCCCTCACACCAGGCAAGTGAG
ATGCCTGAGTTTATGAGACAGTAATGTTTCCCATGAAATAAATCAGCCCT
AGAGACAGCTGTTTTGATTTGGAGGCGAACAGCAAAGCACTCCAGGCAGA
AACTAGTGCTTAATGGGTAAGCAGCTAAGTGGGGATGTCCCAAAAGTGAA
ATAAACCAAAACTAAACCAAAATCTCTCCCCCTAAGAATTTGGGAAGACA
CAAGCAGAGAAAAGGGAAACCTGCAAGTTCCCTGTTCTTTGTTCCCTGTT
CAAATAGGCATAAACCAATTTCCATCTAGTACATATTAAACAAAGGCAAA
ATGAGACAGATTTTCTCCTTGTATTGTCCTAAAATTGAGTTAATTTGTAG
TTCC

Query= MSMg01no330_i18.b1 MSMg01no330_i18.b1 CHROMAT_FILE:
MSMg01no330_i18.b1 PHD_FILE: MSMg01no330_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:16 2005
         (241 letters)



>mm_chr3_139323670_139324310
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattagtggtgaaagatttcatcacaattacaggttcatgaaatcatatacttcttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattagtggtgaaagatttcatcacaattacaggttcatgaaatcatatacttcttcag 260

                                                                       
Query: 61  cataaacttaacgtgagactgccactagctcacactcttaacatgtgatctgtatgactg 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cataaacttaacgtgagactgccactagctcacagtcttaacatgtgatctgtatgactg 320

                                                                       
Query: 121 tgtcagaaattttatctttatttaataaaaaatatatataaatacaatatttccaatttt 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcagaaattttatccttatttaataaaaaatatatataaatacaatatttccaatttt 380

                                                                    
Query: 181 aagtgacaggagatacttgagtgttccttcccttgtttctagtgactctctttttaa 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgacaggagatacttgagtgttccttcccttgtttctagtgactctctttttaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no330_i18.g1 MSMg01no330_i18.g1 CHROMAT_FILE:
MSMg01no330_i18.g1 PHD_FILE: MSMg01no330_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:16 2005
         (239 letters)



>mm_chr3_139444178_139444816
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactgcactgccagctctgtggatagcaacactctagtaaaacacctgtcgtgagaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gactgcactgccagctctgtggatagcaacactctagtaaaacacctgtcgtgagaaaac 376

                                                                       
Query: 61  aagagaaatatgagaaattcttagggtatggagacatcgacttgtttaggtactcatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagagaaatatgagaaattcttagggtatggagacatcgacttgtttaggtactcatttc 316

                                                                       
Query: 121 aacaagagtacttctttaaaaagacagagcctccattttctctcaagcccttccatcgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aacaagagtacttctttaaaaagacagagcctccattttctctcaagcccttccatcgga 256

                                                                  
Query: 181 aacctgctggctggccacattcgtttgatttcctaaattcagggttggaacttgg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aacctgctggctggccacattcgtttgatttcctaaattcagggttggaacttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)