BAC Information

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BAC

Clone NameMSMg01-330M11
Chromosome3 (Build37)
Map Location 77,118,727 - 77,119,017
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330M11.T7 (MSMg01no330_m11.b1)MSMg01-330M11.TJ (MSMg01no330_m11.g1)
ACCAG447243AG447244
length770774
length of high quality
(start - end)
190 (123 - 312)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no330_m11.b1 PHD_FILE: MSMg01no330_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:34 2005CHROMAT_FILE: MSMg01no330_m11.g1 PHD_FILE: MSMg01no330_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGAGGGGGGCGGAATTCAA
ATAGATAGCAAAAAAAAGAATTCCTCCCAACACATAATAATCAGAACAGC
AAATGCACTATTAAACCACGAATATTAAAAGCAGTAAGGAAAAACTGTCA
TGTAACATATAGGAAGGCCTATCAGAATTACATGAGATTTTACACCAGAG
ACTATGAAAGCCAGAAAATCCTGGACAGATGTTAAACAGACACTATTAGA
ACACAAATGCCAGTCTAGGCTACTATACCTAGCCAAACTTTCAATTACCA
TAGACGGAAATTTTTTTGTTTTTCCATGACAAAACCAAATTCACACATTA
TCTTTTTATTTTTTCTGCCCCCCCCCACATAATAACAGATAAACAACATC
AACAACAACAATACTAGTACAGAAAAAATAGAAATATATAGGGGAGAGTA
ATCATTCAACAAACCTAAAAAAGGATAGCCACAAGAACACAATGCCTACT
TTAACTACAAAAAATAATAGGAAGCAACAATTTACTTTTCCTTAATATCT
CTTAATATCTATGGACTCATCTCCTCCATCAAAAAGAATTATATTAACAG
AAAGGGTATACAAACCTGATTCCAAATTCTGCTTGTTACAGGAAAACCAT
TCAGGGTTAAAATTTTTAACACTATTTCATAATGAAAGGTCTGTAATCAC
AACTTTCCCAGCTTATGGCCTAGAATAAAAATAGTGGGACTATACCATTT
TAATAATCGATCCATTATCG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAAGCTTGGGATAAAATACAGCTC
TCCTAAATCTTCTTCCTTTAATAGGCTATCAGTTCAAGCCTATCCAAAAT
AGCCAGGCAAAGGCCTTTAAGGTGGCATGGAAATGCAACAACAGAGATAC
TTTATGAAGCTTGTTGGAACTCCAGGGAAAATTCAATTTCAGAAATGAGG
GTGAGTGCCAGATGTCCCCACTATCCACACCTCTGTTGAGCTCATAACCC
AGTTATGATTGTTGCTGAGTAACAGCCCAGAACCCAGCATCAAATAGCAT
TTGAAACCAAGGAGTCTTTATTCTGCACCGCCCCTCTGGCTCCAGCTTCC
TGTCTGTACCAGTAGCAGGCGGATCTGTTTGCAGATAAATTGCATCACAT
ATCGTAGCCTTGTAATCCTTTCTCCAGCAGCTGTAGTCTATGTTACAACT
CAAAATTCCTGTGACTGAAACCTAAATGCAGTAAACCTCTACCCGAGTAA
GTGACTTATACTCATGAGGGAGCTTCTTCCCCTGACACTCAATATTGAAT
CACAGACAGCTTTTTTGTCTTTCATATAAGAGAACACTTGTTTACTTCCT
TGCTTAAACTTAGAGTCATTAATATTAAAAAAAAAGAAAGGGGCTTGTGA
AATGGGTATAAAGTGAGGGGCCAACAGGTGAAAAGTCTCCATATTTNGTT
CATGTCCCATACATTTACTGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_m11.g1 MSMg01no330_m11.g1 CHROMAT_FILE:
MSMg01no330_m11.g1 PHD_FILE: MSMg01no330_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:34 2005
         (294 letters)



>mm_chr3_77118527_77119220
          Length = 694

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagcttgggataaaatacagctctcctaaatcttcttcctttaataggctatcagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaagcttgggataaaatacagctctcctaaatcttcttcctttaataggctatcagttc 260

                                                                       
Query: 61  aagcctatccaaaatagccaggcaaaggcctttaaggtggcatggaaatgcaacaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcctatccaaaatagccaggcaaaggcctttaaggtggcatggaaatgcaacaacaga 320

                                                                       
Query: 121 gatactttatgaagcttgttggaactccagggaaaattcaatttcagaaatgagggtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatactttatgaagcttgttggaactccagggaaaattcaatttcagaaatgagggtgag 380

                                                                       
Query: 181 tgccagatgtccccactatccacacctctgttgagctcataacccagttatgattgttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccagatgtccccactatccacacctctgttgagctcataacccagttatgattgttgc 440

                                                              
Query: 241 tgagtaacagcccagaacccagcatcaaatagcatttgaaaccaaggagtc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagtaacagcccagaacccagcatcaaatagcatttgaaaccaaggagtc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)