BAC Information

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BAC

Clone NameMSMg01-330P12
Chromosome3 (Build37)
Map Location 134,331,473 - 134,507,092
singlet/doubletdoublet
Overlap geneLOC100039234, Tacr3
Upstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1
Downstream geneLOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330P12.T7 (MSMg01no330_p12.b1)MSMg01-330P12.TJ (MSMg01no330_p12.g1)
ACCAG447386AG447387
length742737
length of high quality
(start - end)
234 (124 - 357)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no330_p12.b1 PHD_FILE: MSMg01no330_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:48 2005CHROMAT_FILE: MSMg01no330_p12.g1 PHD_FILE: MSMg01no330_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,331,473 - 134,331,705)(134,506,805 - 134,507,092)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGCTTTTCATGATAGTCTTCCAATCTATTTGTTAATAGTTTCTTG
ATTAGTTTAACAGATTTTTACCACCAATGAATTACATAGACTGGATAAAG
TGTCTTAAGAACTCTTACTCCCAAAGCCTGACATATATAATGAAGTCAAA
ATACATTAAAGGCATAACTGAAGAGGAAGTGGAACTCAGATACACCCAAA
CTCAACCTAAGCCTTTCCCATTTGTCTGAAGAGATGTTTTAAAACTCATT
AGACTAGACTCTGGTTCCGATTACCTTCCAAGATAACAAAAAGGACACAC
ATCCTATTCCAGTCNGTTCCCAGANACGGNCCCTAAATAAGAAATCAGAA
AGAATACACTCNCNGTTGAAGAACNGCACCCAAAGATNCCGGGCGGAGGC
TGTGATTGTGTGCTCAGCCACATTAATGAGGCTCCAGTCATAAAACTGTT
TTAAAACATTTCTCAACTCTGAATGCCTTTAGGAGAACAGCAGACATGCC
TGGGCAGATTCTCTACAAATAGCTTTTGAGCCCAGGGTCAATGATAGAGA
GTGCATAGGAAAACAGGAAACCTTGCTTGAGAATGAAATGAATTGACAGG
AGATAGAGATAGGTGAAAACTCCAAGGTATAAGAGAGCACGGGTTGTTGA
GACAAACATAACCCTATAGCAGCCGCACATAAAACTATAGCT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACTCTGCATATGTCTATACATGTAT
TTGCATGTTTCGTGGTGTCAACCCTAGAGTTATGAACATGCTCAGTGTAA
GTTATACCACTAAGCAAGACTCTCAACTCCTCAAGACTTGCTTAATAATG
ATGGCAAAATCAATTCAATTAGCAGACTCTTTTCTACTTCAGACATGTAA
GGGTCTGCTTGCCTGAAGTCAGAAAAACCTATCTTTGCTCTTTCTTCTTC
CTCTCTCTTTTATAACCATGCTTTCCCAAACACTTTGATCTTTCCCTAAT
GTTTTTATCATGTTGTTTCTTCCCACACCGCTCTTTCCAAAGTGTTCTTT
CCCACTCCCCTGTCCCACCAGTGTGGATGACACCCATGTCACTCCCCTGC
CCCATCATGAACTGACACCCATGTTCCTGGAACAACATGGCTTTTTCCTT
CTCATCTCCATTTTCCTCTGGCAGCAGCCTAGATTTTACACCTTGCCAAT
CTTGAAGCTTTTCTTATAGAAGCCCACCAAATTATCCTTGTGTTTCCCCT
TGAGTCTGTACTATACACATCCTCAAAAAACTTCTTATCAGGTAGGCATT
ACCATTTCTGAAACTGGAGGCTTCACTTTGCAGATTTGTGCTTTTCCATG
TCCAGTTAAATTTTTTTTATTGACTTAAAATTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_p12.b1 MSMg01no330_p12.b1 CHROMAT_FILE:
MSMg01no330_p12.b1 PHD_FILE: MSMg01no330_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:48 2005
         (234 letters)



>mm_chr3_134331273_134331906
          Length = 634

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaatgaattacatagactggataaagtgtcttaagaactcttactcccaaagcctgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaatgaattacatagactggataaagtgtcttaagaactcttactcccaaagcctgaca 260

                                                                       
Query: 61  tatataatgaagtcaaaatacattaaaggcataactgaagaggaagtggaactcagatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatataatgaagtcaaaatacattaaaggcataactgaagaggaagtggaactcagatac 320

                                                                       
Query: 121 acccaaactcaacctaagcctttcccatttgtctgaagagatgttttaaaactcattaga 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctaaactcaacctaagcctttcccatttgtctgaagagatgttttaaaactcattaga 380

                                                                
Query: 181 ctagactctggttccgattaccttccaagataacaaaaaggacacacatccta 233
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagactctggttccgatgaccttccaagataacaaaaaggacacacatccta 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no330_p12.g1 MSMg01no330_p12.g1 CHROMAT_FILE:
MSMg01no330_p12.g1 PHD_FILE: MSMg01no330_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:48 2005
         (288 letters)



>mm_chr3_134506605_134507292
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactctgcatatgtctatacatgtatttgcatgtttcgtggtgtcaaccctagagttatg 60
           ||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||
Sbjct: 488 aactctgcatatgtctatacatgtatttgcatgtttcgtggggtcaattctagagttatg 429

                                                                       
Query: 61  aacatgctcagtgtaagttataccactaagcaagactctcaactcctcaagacttgctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aacatgctcagtgtaagttataccactaagcaagactctcaactcctcaagacttgctta 369

                                                                       
Query: 121 ataatgatggcaaaatcaattcaattagcagactcttttctacttcagacatgtaagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ataatgatggcaaaatcaattcaattagcagactcttttctacttcagacatgtaagggt 309

                                                                       
Query: 181 ctgcttgcctgaagtcagaaaaacctatctttgctctttcttcttcctctctcttttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctgcttgcctgaagtcagaaaaacctatctttgctctttcttcttcctctctcttttata 249

                                                           
Query: 241 accatgctttcccaaacactttgatctttccctaatgtttttatcatg 288
           ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 248 accatgctttcccaaacactttgatctttccctaatgcttttatcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)