Query= MSMg01no331_d14.b1 MSMg01no331_d14.b1 CHROMAT_FILE:
MSMg01no331_d14.b1 PHD_FILE: MSMg01no331_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:05 2005
(369 letters)
>mm_chr3_154038419_154039186
Length = 768
Score = 613 bits (317), Expect = e-180
Identities = 344/353 (97%), Gaps = 1/353 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgtttgccgtctcatagtccaagtttgactgcatctcttaggttgctccttc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 556 gaattctttgtttgtggtctcatagtccaagtttgactgcatctcttaggttgctcctcc 497
Query: 65 tccctgccattcctcagatttaaatcctgggctggattactttgtgatatcctgattttg 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tccctgccatacctcagatttaaatcctgggctggattactttgtgatatcctgattttg 437
Query: 125 tttttcctacagacatggggatctgtatggctatgttacagagttgagttgaatggtccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tttttcctacagacatggggatctgtatggctatgttacagagttgagttgaatggtccc 377
Query: 185 aaatgccagctaaggcagcagttgaaaaaaatagcccttgtttctctgtcaggctcagca 244
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 376 aaatgccagctaaggcagcagttg-aaaaaatagcccttgttcctctgtcaggctcagca 318
Query: 245 cttacctcagagatgcagtgaaccgaaccaactggtatgtgctaagttaaaatttgctca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttacctcagagatgcagtgaaccgaaccaactggtatgtgctaagttaaaatttgctca 258
Query: 305 aaccacgacactagtgacatttgaccactgtgttgacaactgtaactgaatgt 357
|| |||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 257 aatcacggcactagtgacatttgaccactgtgttgacaactgcaactgaatgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 768
Length adjustment: 9
Effective length of query: 360
Effective length of database: 759
Effective search space: 273240
Effective search space used: 273240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_d14.g1 MSMg01no331_d14.g1 CHROMAT_FILE:
MSMg01no331_d14.g1 PHD_FILE: MSMg01no331_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:06 2005
(507 letters)
>mm_chr3_153871492_153872398
Length = 907
Score = 934 bits (483), Expect = 0.0
Identities = 501/507 (98%)
Strand = Plus / Plus
Query: 1 tgggacttacactttccccttcatagggagaaatttcctgtccctaagtaaggccactca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggacttacactttccccttcatagggagaaatttcctgtccctaagtaaggccactca 260
Query: 61 ctcatgtaatgttttaaaaaacaaagtgagttctaggatgacttttcgattctgtctgga 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatgtaatgttttaaaaaacaaagttagttctaggatgacttttcgattctgtctgga 320
Query: 121 taagcaagggactgtttctactcaaataagtataattaaacacttcaaattttattcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagcaagggactgtttctactcaaataagtataattaaacacttcaaattttattcatt 380
Query: 181 tcacttttagatttcttaatgtaatattgtaggtatttgagatgtgcaacatagagggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacttttagatttcttaatgtaatattgtaggtatttgagatgtgcaacatagagggtt 440
Query: 241 tttaagctagagattgaacccagggctccacacccaacaggaagcattcttccaaccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaagctagagattgaacccagggctccacacccaacaggaagcattcttccaaccaag 500
Query: 301 ctatatccctagccccaacaggcattcgctattaacacatccgcacaattcttttcacaa 360
||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||
Sbjct: 501 ctatatccctagccccaacaggcattcactattaacacatctgtataattcttttcacaa 560
Query: 361 ttaatctgattagcattcatctcttgacataattgccttttgtgagggggtgaaagcact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaatctgattagcattcatctcttgacataattgccttttgtgagggggtgaaagcact 620
Query: 421 tatgatgtgctctggagaaactttcaagtgtgcagtgcacaccccatgctgtacctgagt 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgatgtgctctggagaaaatttcaagtgtgcagtgcacaccccatgctgtacctgagt 680
Query: 481 ctgtgctgtgactttacagctctcacg 507
|||||||||||||||||||||||||||
Sbjct: 681 ctgtgctgtgactttacagctctcacg 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
