BAC Information

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BAC

Clone NameMSMg01-331H20
Chromosome3 (Build37)
Map Location 140,999,399 - 140,999,707
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621343, 4930590L14Rik, Pdha2
Downstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331H20.T7 (MSMg01no331_h20.b1)MSMg01-331H20.TJ (MSMg01no331_h20.g1)
ACCAG447773AG447774
length736724
length of high quality
(start - end)
545 (73 - 617)322 (319 - 640)
definitionCHROMAT_FILE: MSMg01no331_h20.b1 PHD_FILE: MSMg01no331_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:24 2005CHROMAT_FILE: MSMg01no331_h20.g1 PHD_FILE: MSMg01no331_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAAGCCG
CGGAATTCCACCATATACCGTCCCCAGATCTGAAAGAAGTAACTAGAGTG
TGTATGTTGGCAGAGCTCCACTGAGAGGGGTTGCATTTACATGGTAAGAC
TTTGGGGGTGCAAACTCTCCAGCCTGGCTGCTTTTGTAATAATCAGAAAC
TGGAAACAACTAAGATTCTCCTCAACTGAAGAATGAATACAGAAAATATG
GATCATTGATACAATGAAATACTACTCAGCTATTAAAAACAAGGGCATCA
TACATTTTGCAGGCAAATGATTGGAACTAGAAAATATCATCCTGAGTGAG
GTAACCCAGACACAAAGGGACACTCATGGTATGTACTCACACATTAGTGG
ATATTAGCCATAAAGTACAGCACACCCATGCTGCACGCCACAGACTCAAT
GAAGCTAAACAAGAAGAAGGCCCAAGTGAGGATGTTTAAATCTCACGTAG
ATGGGGGAAAATAGTGATAGGAAGCAGATGGAAGGAGGAAACGGGTTTGG
AGAGGGAATGGAGAGAGAATAAGGAGAGACAGGAGGAGAGCAGGTCAGAG
GGCCAGGAATTTGAATGGAAATCTGCAGCTGACTGTGGTGGGAAGGTGAT
ACACATTCCCGAGAACTGTGATTAAGAGGGCTACCAGGAGTCTATGGAAG
TAACTGTACCTGAGAGTCATTAACATGAAGGATATT
CCGATGATGTGGGAGGCCTGGNGGCCGCCTGGTCCTTATGGAGGTGAACT
ATAGAAGTACCAAGACATCTCTGTTTTCCTCTATACCCCTTATTTATTTA
TTTATTTATTTATTACCCTATCTTGTTATGTTTTGGATATTAGCCCTCTA
TCATATGTGGGGTTGGTTCTTTTATTGTTAAGAATTGTTTTCCATATCCT
GGGTTATATGTTTTGCCATATGAAATTGAGAATTGTTCTTTCCATGCCTG
TGAAGAATTTTGTTGGAATTTTGATTAGTATTGCATTGAATCTGTAGATT
GCTTTTGGTTTGTTTTGTATTTTTTGCTATGTTAATGCTACAAATCTACA
AACATGGAAGATCTTTTAATTTTCTTACGTCTTCTTCGATTTCTTTCTCA
AGAGAGTTGAACCTCTTGTCATACAGATCTTTCATTTTTTTGGTTAGAGT
CACACCAAGATAGTTTATGTTATTTGTGAATATTCTGATGGGTGTTGTTT
CCCTATTTTCTTTCTCAGCCCATTTATTATTTGTATAAAAGAAAGCTACT
GATTTGTTTGAGTTAATTTTGTATTCAGCCACTTTGCTGAAGTTGTTTAC
CAGCTGTAGAAGTTCTCTGGTAGAATTTTGGGGGTTGCTATGTTGACTAA
CATATCATCTACAAATACTGATATCTTGACTTCTTCTTTGCCAATTTGTA
TCCCCTTGATGTCTTCTTGTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_h20.b1 MSMg01no331_h20.b1 CHROMAT_FILE:
MSMg01no331_h20.b1 PHD_FILE: MSMg01no331_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:24 2005
         (545 letters)



>mm_chr3_140999399_141000342
          Length = 944

 Score =  538 bits (278), Expect = e-157
 Identities = 302/310 (97%), Gaps = 1/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccagatctgaaagaagtaactagagtgtgtatgttggcagagctccactgagaggggtt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cccagatctg-aagaagtaactagagtgtgtatgttggcagagctccactgagaggggtt 251

                                                                       
Query: 61  gcatttacatggtaagactttgggggtgcaaactctccagcctggctgcttttgtaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcatttacatggtaagactttgggggtgcaaactctccagcctggctgcttttgtaataa 191

                                                                       
Query: 121 tcagaaactggaaacaactaagattctcctcaactgaagaatgaatacagaaaatatgga 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tcagaaactggaaacaactaatattctcctcaactgaagaatgaatacagaaaatatgga 131

                                                                       
Query: 181 tcattgatacaatgaaatactactcagctattaaaaacaagggcatcatacattttgcag 240
           |||||||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 130 tcattgatacaacgaaatactatttagctattaaaaacaagggcattatacattttgcag 71

                                                                       
Query: 241 gcaaatgattggaactagaaaatatcatcctgagtgaggtaacccagacacaaagggaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  gcaaatgattggaactagaaaatatcatcctgagtgaggtaacccagacacaaagggaca 11

                     
Query: 301 ctcatggtat 310
             ||||||||
Sbjct: 10  ggcatggtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space:   499690
Effective search space used:   499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)