Query= MSMg01no331_i05.b1 MSMg01no331_i05.b1 CHROMAT_FILE:
MSMg01no331_i05.b1 PHD_FILE: MSMg01no331_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:25 2005
(284 letters)
>mm_chr3_152042309_152042992
Length = 684
Score = 489 bits (253), Expect = e-143
Identities = 276/291 (94%), Gaps = 14/291 (4%)
Strand = Plus / Minus
Query: 1 ccctgagtaccggaacaataggtgcgtgcccccacacacaggtattctcctaactgtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ccctgagtaccggaacaataggtgcgtgcccccacacacaggtattctcctaactgtgtg 425
Query: 61 ttattactttgtgttgtctgctgtttttctaataataagcactgaaatctgtttttaaat 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 424 ttattactttgtgttgtctgctgtttttctaataataagcactgaaacctgtttttaaat 365
Query: 121 ttttctccctttggtcaagtggggcttatttaagcaatcaacttggatacatgtttttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttctccctttggtcaagtggggcttatttaagcaatcaacttggatacatgtttttta 305
Query: 181 atcacaaacaaatatcaagccattgtactcactacttgcagtcccatggtgacagatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 atcacaaacaaatatcaagccattgtactcactacttgcagtcccatggtgacagatgac 245
Query: 241 tgac-----atttttttt--tatgtcacaatctgagctgggctgtcctttg 284
|||| | | |||||||||||||||||||||||||||||||
Sbjct: 244 tgacaggaga-------tcatatgtcacaatctgagctgggctgtcctttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no331_i05.g1 MSMg01no331_i05.g1 CHROMAT_FILE:
MSMg01no331_i05.g1 PHD_FILE: MSMg01no331_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:25 2005
(550 letters)
>mm_chr3_151876785_151877739
Length = 955
Score = 1011 bits (523), Expect = 0.0
Identities = 545/559 (97%), Gaps = 13/559 (2%)
Strand = Plus / Plus
Query: 1 aaatgactatggttatgggggacaaaaaagacccttagaagatggaggtaagttatagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgactatggttatgggggacaaaaaagacccttagaagatggaggtaagttatagcc 260
Query: 61 aacaagaataattatcttccatggtattcatttgataagattttcagtattgtttatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaagaataattatcttccatggtattcatttgataagattttcagtattgtttatcaa 320
Query: 121 gatgacttatcaaaatactactatctattggtctcagaagaataggattttgaaaaagac 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgatttatcaaaatactactatctattggtctcagaagaataggattttgaaaaagac 380
Query: 181 agacctagaaaaggtaggtataatttgaatctattgggaagtattattgtaatagaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacctagaaaaggtaggtataatttgaatctattgggaagtattattgtaatagaaaac 440
Query: 241 aggttttgttatttttttttt-----gtcctgttataggattatgcttgctttgagttgc 295
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aggttttgttatttttttttttttttgtcctgttataggattatgcttgctttgagttgc 500
Query: 296 acagactgttaatgatataaataaagttatgttatttgggaaacactttactgaa----c 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 acagactgttaatgatataaataaagttatgttatttgggaaacactttactgaattttc 560
Query: 352 tcccccatttattgaatgagtctttgatactccctttcattcagtcagaatccacgtcta 411
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tc----atttattgaatgagtctttgatactccctttcattcagtcagaatccacgtcta 616
Query: 412 ggttaaggttggttggttgcaggcatcccatttttatattgttttagtgttttgtgtgtt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggttaaggttggttggttgcaggcatcccatttttatattgttttagtgttttgtgtgtt 676
Query: 472 tcatatttatctttaaacattgattaaaactgtggattcatagtgttttctctttttaaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tcatatttatctttaaacattgattaaaactgtggattcatagtgttttctctttttaaa 736
Query: 532 aatcatcacttctgcactt 550
|||||||||||||||||||
Sbjct: 737 aatcatcacttctgcactt 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 955
Length adjustment: 10
Effective length of query: 540
Effective length of database: 945
Effective search space: 510300
Effective search space used: 510300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
