Query= MSMg01no331_o02.b1 MSMg01no331_o02.b1 CHROMAT_FILE:
MSMg01no331_o02.b1 PHD_FILE: MSMg01no331_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:51 2005
(419 letters)
>mm_chr3_114514248_114515066
Length = 819
Score = 781 bits (404), Expect = 0.0
Identities = 413/416 (99%)
Strand = Plus / Plus
Query: 1 ggaaggaggcagaaggaacagagttcaaggttgttggtagccattaagttcaaagccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaggaggcagaaggaacagagttcaaggttgttggtagccattaagttcaaagccatt 260
Query: 61 ataaactgcaagtgatccttgtcaaaaaagaaatataaataaataaaagatctaaaatat 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ataaactgcaagtgatccttgtcaaaaaagaaatatgaataaataaaagatctaaaatat 320
Query: 121 tacatggtatttcttattaaaaatttaacaaaataatcatcatctaatttaatttgtagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatggtatttcttattaaaaatttaacaaaataatcatcatctaatttaatttgtagg 380
Query: 181 aatttgagttagaaatgccactgagagacttgtaaccatttagaacataaaacctctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttgagttagaaatgccactgagagacttgtaaccatttagaacataaaacctctgga 440
Query: 241 aaattgtactctggtgcatcatttataggcttggaagactaaagactagagagtactttt 300
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aaattgtactctggtgtatcatttataggcttggacgactaaagactagagagtactttt 500
Query: 301 cagatctggccaggcaatatgcatattccatgaactttattttaaatgctctgtcttcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagatctggccaggcaatatgcatattccatgaactttattttaaatgctctgtcttcaa 560
Query: 361 gtatgcatgtatgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtatgcatgtatgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_o02.g1 MSMg01no331_o02.g1 CHROMAT_FILE:
MSMg01no331_o02.g1 PHD_FILE: MSMg01no331_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:51 2005
(659 letters)
>mm_chr3_114670098_114671157
Length = 1060
Score = 1123 bits (581), Expect = 0.0
Identities = 584/585 (99%), Gaps = 1/585 (0%)
Strand = Plus / Minus
Query: 76 agccccgacttctaggttaaagattaactttgttagcttttgacattaaaattgagtcaa 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 agccccgacttctaggttaaagattaactttgttagcttttgacattaaaattgagtcaa 1001
Query: 136 acaataggcactgtcagggaaggtcaacagtacatttgaagaagtttgctagatctgtct 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 acaataggcactgtcagggaaggtcaacagtacatttgaagaagtttgctagatctgtct 941
Query: 196 ccttccctgtgattcctccactgctttgcactgtgcatggtgagtaacgacagttaataa 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 ccttccctgtgattcctccactgctttgcactgtgcatggtgagtaacgacagttaataa 881
Query: 256 atatgtcctgagcaaatgaaagaataataaaacaacagatttgcgctctaaatgtatact 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 atatgtcctgagcaaatgaaagaataataaaacaacagatttgcgctctaaatgtatact 821
Query: 316 cctgtttccttaaggaaagtgataacagcaaacctcagtgatgaacacttagtttatctt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 cctgtttccttaaggaaagtgataacagcaaacctcagtgatgaacacttagtttatctt 761
Query: 376 cgctgaggttcttagagtgaggacgatgcttagaattgctttctcctccatactttgctc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cgctgaggttcttagagtgaggacgatgcttagaattgctttctcctccatactttgctc 701
Query: 436 tcagctgaagtttcctcttgcctttgtatttaatgattaagattgagaaattatctccaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tcagctgaagtttcctcttgcctttgtatttaatgattaagattgagaaattatctccaa 641
Query: 496 atctttctttattatctttctatttcacatatcccagatataaactgcagattattgctg 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 atctttctttattatctttctatttcacatatcccagatataaactgcagattattgctg 581
Query: 556 tac-aaaaaaaaatctccccttaatcctatgaaaatgttactagtttaagtgcaaaacca 614
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tacaaaaaaaaaatctccccttaatcctatgaaaatgttactagtttaagtgcaaaacca 521
Query: 615 gtcatttcatattttaaatttatttcttaatgggagccatttaga 659
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gtcatttcatattttaaatttatttcttaatgggagccatttaga 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
