BAC Information

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BAC

Clone NameMSMg01-331O03
Chromosome3 (Build37)
Map Location 57,900,369 - 57,901,028
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2
Downstream geneEG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331O03.T7 (MSMg01no331_o03.b1)MSMg01-331O03.TJ (MSMg01no331_o03.g1)
ACCAG448065AG448066
length803733
length of high quality
(start - end)
94 (131 - 224)660 (68 - 727)
definitionCHROMAT_FILE: MSMg01no331_o03.b1 PHD_FILE: MSMg01no331_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:51 2005CHROMAT_FILE: MSMg01no331_o03.g1 PHD_FILE: MSMg01no331_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTGCCTTCTCTTTCTTTTTTCTTTTTTTTCCCGTTTTTCTAATAAAAA
TTNNCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAAGGA
TGGGCGTGATTCATAAAATCTTCCGGTCATACCTTAAAAATGTATATATT
CCACTTACTCTGAATACATGAAGGGGATGGATACATTTCTAAATGTATAT
AGGGTATCAGAATTCAGCCAAGGTGAGATAAATAATTTAAACAAACCTGT
ATCAGACAGTGAAATTGAAATCGTGAATTTAAAATATGCCAAGTTTAAAA
AAGTTTAGGCCCACATGATTCACTGATGATATTCCCCCAACCTTCAAAGA
ACTAATAGCCACTTGCACTATTCCATAAGATATATTTATGGAAAAGGTCT
TCTAATGAAGCTAGTCTTGCTCTGATACCCAAACCAGACAATATTACTAC
AGCAAAATACTTTGAAATCATACTCGCCCCACATATTTTAAAAAGGCATT
CATTGTGATCTATCTGGCTTCATTCCAGTGATGCAAGGATTATTTCTATA
TACTTATCTTAATACATGTTATTAACTACATTTAGTCTCATATACAGAAA
TCACATGTTCTGTCCATTTGAACTTTATCGACTTTACCAATGCTAACATC
CCATTATGTTAAAAGTTCTTTACAAGCCGATAACAGAAAGGACACTTTAC
AAAATTATTAAAGGATGCATTATTGATATAGCTTATATTCCACCTTTATA
CTAAATTGAAGATAGTATTTCTCCTATAAATAGTGAACATACCAGGTTTG
TTN
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTTGTAGGCTCATAAAGATCCCTGAGACTCTG
CCTCCCAAGTACAGGAATAAAATGCATACGTCATTCACACCTGACCATGG
CTGAAATTTGTTATTATTTTCTCTTACCATGTTTACCGCCATTCTACCCA
GCACAAAGGGGAAAGGGACAAGTGCTTTTATTTAAACTTGCAATTAAATT
TATTTTTTGAGTGGATATATAAAGCAAGAAAATTGTATGAATAAATATAT
GGAATACTGTGGTGCTTTGAACATGAAATGTCTCCCACAGGCTCATGTGT
TGGACATTGGTCCCAGCTCTGGGTCACAGAGGACAGCCTTGAGATTTACA
GCATGGTCTCTCTTTCCGCCCGCTCTCTGCTTTGTAAGCGCAAACACTGT
AGTCAGCTACCTTCGGGTCTCGCCACTATGACTTCCATGATGGGCTATAC
CCCTGTGTTCCCTTCTCCTCATAGTTGTTTCTTGTCAAATATTTGGTCAG
AACAGTGAAAATAAGTACCGAATGCATGCACACAAGCTACATAAGCACGC
ATGCGATATTTAAATCATGAAAACATACGTTCTTATTAAACTAATAAAAT
TTGTTTTAAAATACGCAACTCAGTATTGACATTTTTTAACTCATCAAAAT
AATTTATAATGGTTAACTGCCTTTTACATATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_o03.g1 MSMg01no331_o03.g1 CHROMAT_FILE:
MSMg01no331_o03.g1 PHD_FILE: MSMg01no331_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:52 2005
         (660 letters)



>mm_chr3_57900169_57901228
          Length = 1060

 Score = 1168 bits (604), Expect = 0.0
 Identities = 646/660 (97%), Gaps = 1/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgtaggctcataaagatccctgagactctgcctcccaagtacaggaataaaatgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgtaggctcataaagatccctgagactctgcctcccaagtacaggaataaaatgcat 260

                                                                       
Query: 61  acgtcattcacacctgaccatggctgaaatttgttattattttctcttaccatgtttacc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 acatcattcacacctgaccatggctgaaatttgttattattttctcttaccatgtttgcc 320

                                                                       
Query: 121 gccattctacccagcacaaaggggaaagggacaagtgcttttatttaaacttgcaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccattctacccagcacaaaggggaaagggacaagtgcttttatttaaacttgcaattaa 380

                                                                       
Query: 181 atttattttttgagtggatatataaagcaagaaaattgtatgaataaatatatggaatac 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 atttattttttgagtggatatataaagcaagaaaattgtatgaatgaatatatggaatac 440

                                                                       
Query: 241 tgtggtgctttgaacatgaaatgtctcccacaggctcatgtgttggacattggtcccagc 300
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tgtggtgctttgaacgtgaaatgtctcccataggctcatgtgttggacattggtcccagc 500

                                                                       
Query: 301 tctgggtcacagaggacagccttgagatttacagcatggtctctctttccgcccgctctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct: 501 tctgggtcacagaggacagccttgagatttacagcatggtctctctttctgtctgctctc 560

                                                                       
Query: 361 tgctttgtaagcgcaaacactgtagtcagctaccttcgggtctcgccactatgacttcca 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttttgtaagcgcaaacactgtagtcagctaccttcgggtctcgccactatgacttcca 620

                                                                       
Query: 421 tgatgggctatacccctgtgttcccttctcctcata-gttgtttcttgtcaaatatttgg 479
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 621 tgatgggctatacccctgtgttcccttctccccataagttgtttcttgtcaaatatttgg 680

                                                                       
Query: 480 tcagaacagtgaaaataagtaccgaatgcatgcacacaagctacataagcacgcatgcga 539
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 tcagaacactgaaaataagtaccgaatgcatgcacacaagctacataagcacacatgcga 740

                                                                       
Query: 540 tatttaaatcatgaaaacatacgttcttattaaactaataaaatttgttttaaaatacgc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatttaaatcatgaaaacatacgttcttattaaactaataaaatttgttttaaaatacgc 800

                                                                       
Query: 600 aactcagtattgacattttttaactcatcaaaataatttataatggttaactgcctttta 659
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 801 aactcagtattgacattttttaactcaacaaaataatttataatggttaactgcctttta 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)